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Report for CCDS25758.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25758.2 Public Mus musculus 11 Gps1 23 108 98 CCDS HistoryNCBI Gene:209318Re-query CCDS DB by CCDS ID:25758.2Re-query CCDS DB by GeneID:209318See the combined annotation on chromosome 11 in Sequence Viewer

Public Note for CCDS 25758.1
The coding region has been updated to extend the N-terminus to one that is more supported by the available transcript and conservation data.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 25758.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000172809.1 ENSMUSP00000133855.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000172809.1Link to Ensembl Protein Viewer:ENSMUSP00000133855.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000172809Re-query CCDS DB by Protein ID:ENSMUSP00000133855
Original member NCBI NM_145370.3 NP_663345.2 Updated not alive Link to Nucleotide Sequence:NM_145370.3Link to Protein Sequence:NP_663345.2Re-query CCDS DB by Nucleotide ID:NM_145370Re-query CCDS DB by Protein ID:NP_663345
Current member NCBI NM_145370.4 NP_663345.2 Accepted alive Link to Nucleotide Sequence:NM_145370.4Link to Protein Sequence:NP_663345.2Re-query CCDS DB by Nucleotide ID:NM_145370Re-query CCDS DB by Protein ID:NP_663345Link to BLAST:NP_663345.2

Chromosomal Locations for CCDS 25758.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 120784576 120784725 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120785121 120785213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120785700 120785881 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120786302 120786466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120786552 120786687 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120786772 120786849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120787009 120787069 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120787380 120787465 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120787697 120787791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120787876 120787981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120788062 120788142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120788244 120788381 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120788462 120788596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120788670 120788744 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1581 nt):
ATGCGGGGCAGCCCGGCGCCCAGCTCGGCCTCGTCGTCGGCCTCCGACCTGAGCCGCAGCCCTGCGCACA
GCAGGTCCGACTTGCGGCCCGGCACGGCGGGCGACTACAGCCTGAGCGCCAGCCTGTCGGCCTGCACGTT
GCTTTCCGAGGGGGCCGTGGAACCCATGCAGATTGATGTCGATCCGCAGGAAGATCCGCAGAACGCACCT
GATGTCAACTATGTGGTGGAGAATCCCACCCTGGATCTGGAGCAGTATGCAGCCAGCTACAGTGGCCTGA
TGCGAATTGAGCGACTACAGTTTATTGCTGACCGTTGCCCTCCACTGAGGGTAGAGGCCTTGAAAATGGC
TCTATCCTTCGTGCAGAGGACCTTCAATGTGGACATGTATGAAGAGATACACCGGAAGCTCTCCGAGGCT
ACCAGGGAGCTGCAGAATGCACCTGATGCCATCCCTGAGAGTGGAGTGGAGCCCCCGCCCCTGGACACAG
CCTGGGTGGAGGCCACTCGGAAGAAGGCTCTGTTGAAACTGGAGAAGCTGGACACGGACTTGAAGAACTA
TAAGGGCAATTCTATCAAAGAGAGCATCAGGCGCGGCCACGATGACCTGGGTGATCACTACCTGGACTGT
GGGGACCTCAGCAATGCCCTCAAATGTTACTCACGAGCCCGAGACTACTGCACCAGTGCTAAGCATGTCA
TCAACATGTGCCTCAACGTCATCAAGGTCAGTGTCTACTTGCAAAATTGGTCTCATGTGTTAAGCTATGT
CAGCAAGGCCGAGTCTACTCCAGAGATTGCTGAGCAGCGGGGAGAGCGGGACAGCCAGACGCAAGCCATC
CTCACCAAGCTCAAGTGTGCTGCAGGCTTGGCTGAGCTGGCCGCACGGAAGTATAAGCAAGCAGCCAAGT
GCTTCCTTCTGGCTTCCTTTGATCACTGTGACTTCCCAGAGCTGCTGTCCCCCAGCAATGTGGCTGTCTA
TGGTGGCCTGTGTGCCTTAGCCACCTTTGACCGGCAGGAGCTGCAACGAAATGTCATCTCCAGCAGTTCC
TTCAAGCTGTTCCTGGAGCTGGAGCCACAGGTCAGAGACATCATCTTCAAATTCTATGAATCCAAGTATG
CCTCATGCTTGAAGATGCTGGACGAGATGAAGGATAACCTGCTCCTGGACATGTACCTGGCCCCTCACGT
CAGGACACTGTACACCCAGATTCGTAACCGGGCTCTTATCCAATACTTCAGCCCCTATGTGTCAGCTGAT
ATGCACAAGATGGCTGCAGCCTTCAACACAACAGTTGCAGCTCTGGAAGATGAGCTGACACAGCTCATTC
TGGAGGGCCTTATTAATGCCCGCATCGACTCACACAGCAAGATACTGTATGCTCGAGATGTGGATCAGCG
TAGCACCACCTTTGAGAAGTCCCTGCTGATGGGCAAGGAATTCCAACGACGTGCCAAAGCTATGATTCTG
AGAGCAGCTGTGCTCCGCAACCAGATCCATGTCAAGTCTCCTCCTAGAGAAGGGAGCCAAGGGGAGCTGA
CTCCAGCCAACAGCCAGTCACGCATGAGTACCAACATGTGA

Translation (526 aa):
MRGSPAPSSASSSASDLSRSPAHSRSDLRPGTAGDYSLSASLSACTLLSEGAVEPMQIDVDPQEDPQNAP
DVNYVVENPTLDLEQYAASYSGLMRIERLQFIADRCPPLRVEALKMALSFVQRTFNVDMYEEIHRKLSEA
TRELQNAPDAIPESGVEPPPLDTAWVEATRKKALLKLEKLDTDLKNYKGNSIKESIRRGHDDLGDHYLDC
GDLSNALKCYSRARDYCTSAKHVINMCLNVIKVSVYLQNWSHVLSYVSKAESTPEIAEQRGERDSQTQAI
LTKLKCAAGLAELAARKYKQAAKCFLLASFDHCDFPELLSPSNVAVYGGLCALATFDRQELQRNVISSSS
FKLFLELEPQVRDIIFKFYESKYASCLKMLDEMKDNLLLDMYLAPHVRTLYTQIRNRALIQYFSPYVSAD
MHKMAAAFNTTVAALEDELTQLILEGLINARIDSHSKILYARDVDQRSTTFEKSLLMGKEFQRRAKAMIL
RAAVLRNQIHVKSPPREGSQGELTPANSQSRMSTNM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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