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Report for CCDS25751.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25751.1 Public Mus musculus 11 Aspscr1 23 108 98 CCDS HistoryNCBI Gene:68938Re-query CCDS DB by CCDS ID:25751.1Re-query CCDS DB by GeneID:68938See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25751.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000026135.14 ENSMUSP00000026135.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000026135.14Link to Ensembl Protein Viewer:ENSMUSP00000026135.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000026135Re-query CCDS DB by Protein ID:ENSMUSP00000026135
Original member NCBI NM_026877.2 NP_081153.1 Updated not alive Link to Nucleotide Sequence:NM_026877.2Link to Protein Sequence:NP_081153.1Re-query CCDS DB by Nucleotide ID:NM_026877Re-query CCDS DB by Protein ID:NP_081153
Current member NCBI NM_026877.3 NP_081153.1 Accepted alive Link to Nucleotide Sequence:NM_026877.3Link to Protein Sequence:NP_081153.1Re-query CCDS DB by Nucleotide ID:NM_026877Re-query CCDS DB by Protein ID:NP_081153Link to BLAST:NP_081153.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081153.1 550 Q8VBT9-1 550 100% 0 0

Chromosomal Locations for CCDS 25751.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 120673069 120673170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120674040 120674095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120677511 120677625 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120678420 120678520 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120686644 120686701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120688529 120688602 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120688912 120689341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120701144 120701283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120701481 120701562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120702484 120702550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120703603 120703665 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120704072 120704124 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120708658 120708709 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120708930 120708999 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120709071 120709246 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120709344 120709357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1653 nt):
ATGGCGGCCCCGGCGGGCGGCGGGGGCTCCGCGGTGTCGGTGCTGGCCCCAAACGGGCGGCGCCACACGG
TGAAGGTGACGCCGAGCACCGTGCTGCTGCAGGTACTAGAAGACACATGCCGGCGGCAAGACTTCAACCC
CAGTGAATACGACCTGAAGTTTCAGAGGACGGTGCTAGACCTCTCTCTCCAGTGGAGATTTGCCAACCTG
CCTAACAATGCCAAGCTGGAGATGGTGCCTGTGTCCCGTAGCCGCGAGGGGCCTGAGAACATAGTTCGCA
TCGCGTTCCAGCTGGATGACGGCTCCAGGTTGCAGGACGCTTTCTGTTCCCGACAGACTCTCTGGGAGCT
TCTCAGCCATTTTGCACAGACCAGGGAGCGTCTGCAGCAGCTGGGTGAGAAGACCCCTGTCTGCGTGTAC
ATGAGGAATGAGGTGACTGGTAGAGCTGCCTTACAGAACACAACCCTTCAGTCACTGGGCCTGACAGGTG
GTAGTGCCACCATCAGGTTTGTCATAAAGCAGTGTGACACCGCCGGCAAACAGGAGTCCATAGCCGTCAG
GAGCAAGGCCCCGGGAAGTCCGGTCTCCTCCTTGTCAGCCGACCAGGCATCCAGTAGCACATTGCTTCCT
CTGAACTCTGGGGAGTTCAGCAGGGGAGACCTAAACCATGAGGGTGATGCAAACACCTCAGGGACCGGCC
TTGAGGGTGGCCCCAAACCAACGGATGCTCAAACAAAGCAAAGCACCAGTGAGCCTGCATCGGCCCCCTT
CGTTCCCTTCTCTGGGGGGGGCCAGCGGCTGGGGGGCCCGTCTGCGTCCTTGAGACCTCTAACATCACCT
TCGGCCAATTCATCCAAGTCTTTCTCTGGCCCTGGGGGCCCTTCTAAGCCCAAGAAGCCAAAGCCTGGTG
AGGAGCCCCAGCAGGAGCCTGAACCGCCCGTTGACCGAGATCCTGTGGTGTACCACCCTGACCTAGAGGA
CTTGCTACAGCCCTGGCCGGCAGAGGTGCCTGACGAGTTCTTTGAGGTGACTGTGGATGATGTGAGGAGA
CGCTTGGCCCAGCTCAAGAGTGAGCGGAAGCGTCTGGAAGAAGCCCCCCTGGTGACCAAGGCTTTCAGGG
AGGCTCAGATGAAGGAGAAACTGGAACGTTACCCAAAGGTGGCTCTGCGGGTCCTATTCCCTGACCGCTA
CATCCTGCAGGGCTTCTTCCGCCCCAGTGAGACAGTGGGGGATCTTCGAGACTTTGTTAGGAGCCACCTG
GGGAACCCCGAGCTCTCCTTTTACCTATTCATCGCTCCACCCAAAATGGTCCTGGATGACCACACGCTGA
CTCTCTTTCAGGCAAACCTCTTCCCTGCTGCGCTTGTGCACTTTGGAGCTGAAGAACCAACAGGTCTCTA
TCTGGAACCTGGGCTGCTAGAACACACCGTCTCCCCATCTACAGCTGATGTGCTGGTGGCCAGGTGTATG
TCCCGGGCTTCCGGGTCCCCACCTCTGCTGCCAGCCCCTGACCCTGTATCCCTGGAGTCTGAGCCAATCG
CTGAGGATGGGGCACTGGGGCCCCCAGAGCCCATCCAAGGGACAGCCCAGCCTGTGAAGAGAAGCCTGGG
CAAAGTACCCAAGTGGCTGAAGCTGCCAGCCAGCAAGAGGTGA

Translation (550 aa):
MAAPAGGGGSAVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKFQRTVLDLSLQWRFANL
PNNAKLEMVPVSRSREGPENIVRIAFQLDDGSRLQDAFCSRQTLWELLSHFAQTRERLQQLGEKTPVCVY
MRNEVTGRAALQNTTLQSLGLTGGSATIRFVIKQCDTAGKQESIAVRSKAPGSPVSSLSADQASSSTLLP
LNSGEFSRGDLNHEGDANTSGTGLEGGPKPTDAQTKQSTSEPASAPFVPFSGGGQRLGGPSASLRPLTSP
SANSSKSFSGPGGPSKPKKPKPGEEPQQEPEPPVDRDPVVYHPDLEDLLQPWPAEVPDEFFEVTVDDVRR
RLAQLKSERKRLEEAPLVTKAFREAQMKEKLERYPKVALRVLFPDRYILQGFFRPSETVGDLRDFVRSHL
GNPELSFYLFIAPPKMVLDDHTLTLFQANLFPAALVHFGAEEPTGLYLEPGLLEHTVSPSTADVLVARCM
SRASGSPPLLPAPDPVSLESEPIAEDGALGPPEPIQGTAQPVKRSLGKVPKWLKLPASKR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
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