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Report for CCDS25725.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25725.1 Public Mus musculus 11 Aatk 23 108 98 CCDS HistoryNCBI Gene:11302Re-query CCDS DB by CCDS ID:25725.1Re-query CCDS DB by GeneID:11302See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25725.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000103019.1 ENSMUSP00000099308.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000103019.1Link to Ensembl Protein Viewer:ENSMUSP00000099308.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000103019Re-query CCDS DB by Protein ID:ENSMUSP00000099308
Original member Current member EBI ENSMUST00000103020.7 ENSMUSP00000099309.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000103020.7Link to Ensembl Protein Viewer:ENSMUSP00000099309.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000103020Re-query CCDS DB by Protein ID:ENSMUSP00000099309
Original member Current member NCBI NM_001198787.1 NP_001185716.1 Accepted alive Link to Nucleotide Sequence:NM_001198787.1Link to Protein Sequence:NP_001185716.1Re-query CCDS DB by Nucleotide ID:NM_001198787Re-query CCDS DB by Protein ID:NP_001185716Link to BLAST:NP_001185716.1
Original member Current member NCBI NM_007377.4 NP_031403.2 Accepted alive Link to Nucleotide Sequence:NM_007377.4Link to Protein Sequence:NP_031403.2Re-query CCDS DB by Nucleotide ID:NM_007377Re-query CCDS DB by Protein ID:NP_031403Link to BLAST:NP_031403.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001185716.1 1317 Q80YE4-2 1317 99.9241% 0 1
NP_031403.2 1317 Q80YE4-2 1317 99.9241% 0 1

Chromosomal Locations for CCDS 25725.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 120008404 120008444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120009275 120009475 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120009607 120009754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120009834 120012426 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120012723 120012872 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120013448 120013569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120013650 120013734 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120015459 120015592 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120016106 120016193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120016313 120016431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120016728 120016807 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120018745 120018892 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120021402 120021446 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3954 nt):
ATGCTGGCCTGCCTGTGTTGTAAGAAGGGCGGCATCGGGTTCAAGGAGTTTGAGAATGCTGAAGGGGACG
AGTATGTGGCCGACTTCTCGGAGCAGGGCTCCCCGGCTGCAGCTGCACAGACCGGCCCCGATGTGTATGT
CCTGCCCCTCACCGAGGTCTCCTTACCCATGGCCAAGCAGCCGGGTCGCTCCGTGCAACTTCTCAAGTCC
ACGGACCTGGGCCGGCACAGCCTCCTGTACTTAAAGGAGATTGGCCACGGCTGGTTTGGGAAGGTGTTTT
TGGGGGAGGTACACTCGGGCGTCAGTGGCACGCAGGTGGTGGTGAAGGAGCTGAAGGTGAGCGCCAGCGT
GCAGGAGCAGATGCAGTTCCTGGAGGAGGCGCAGCCCTACAGGGCCCTGCAGCACAGCAACCTGCTCCAG
TGCCTGGCCCAGTGTGCTGAAGTGACCCCCTACCTGCTGGTTATGGAGTTCTGTCCACTGGGGGACCTCA
AAGGTTATCTACGGAGCTGCCGGGTGACAGAGTCCATGGCGCCTGACCCACTTACCTTGCAGCGCATGGC
GTGCGAGGTGGCGTGTGGCGTCTTGCATCTACATCGACACAACTATGTACACAGTGACCTGGCCCTGAGG
AACTGCCTGCTTACGGCTGACCTGACAGTGAAGGTTGGTGATTATGGCCTGTCGCATTGCAAATACAGGG
AAGACTATCTCGTGACCGCTGACCAGCTGTGGGTGCCGCTGCGCTGGATCGCGCCAGAGCTGGTGGACGA
GGTTCACGGCAACCTGCTGGTGGTGGACCAGACCAAGAGCAGCAACGTGTGGTCCCTGGGTGTGACCATC
TGGGAGCTTTTCGAGTTGGGTGCGCAGCCGTACCCCCAGCACTCGGACGGGCAGGTGCTGGCTTACGCCG
TCCGGGAGCAGCAGCTTAAGTTGCCCAAGCCCCAGCTGCAGCTGGCTCTATCTGATCGATGGTACGAGGT
GATGCAGTTCTGCTGGCTGCAGCCAGAGCAGAGGCCCACAGCTGAAGAGGTTCATCTACTGCTGTCCTAC
TTGTGTGCTAAGGGCACCACAGAATTGGAGGAGGAGTTTGAGCGGCGCTGGCGCTCCCTGCGGCCCGGGG
GCAGCACGGGCCTGGGCTCGGGTTCTGCAGCCCCAGCAGCTGCCACCGCCGCCTCCGCGGAGCTCACCGC
TGCCTCGTCTTTCCCGCTGCTGGAGCGGTTCACCAGCGACGGCTTTCACGTGGACAGTGATGACGTGCTG
ACGGTCACGGAGACAAGCCACGGCCTCAACTTTGAATACAAGTGGGAGGCTGGCTGTGGCGCTGAGGAGT
ACCCACCCTCGGGGGCTGCATCAAGCCCAGGCTCGGCAGCGCGCCTGCAGGAGTTGTGCGCGCCTGACAG
TTCACCGCCGGGTGTGGTGCCAGTCCTCAGTGCCCACAGCCCCTCAGTGGGTAGCGAGTACTTCATCCGC
CTGGAGGGGGCAGTGCCTGCTGCTGGCCACGATCCAGACTGTGCCGGCTGCGCTCCCAGCCCCCAGGCTG
TGACTGACCAGGACAATAACTCTGAGGAGAGCACTGTTGCGTCCCTTGCCATGGAGCCATTGCTGGGCCA
TGCACCCCCAACTGAGGGTCTGTGGGGCCCCTGTGACCACCATTCACATAGGAGGCAAGGGTCACCCTGT
CCCTCACGCTCACCCTCTCCTGGGACCCCGATGTTGCCAGCTGAAGACATAGACTGGGGTGTGGCTACCT
TCTGCCCGCCCTTCTTTGATGACCCACTGGGTGCATCTCCCTCGGGGAGTCCTGGGGCCCAGCCCTCCCC
CAGTGATGAGGAGCCAGAGGAGGGGAAGGTGGGGTTGGCCGCTCAGTGTGGACACTGGAGCTCTAACATG
TCAGCTAACAACAACAGTGCCAGTCGCGACCCAGAATCCTGGGATCCTGGCTATGTTAGCAGCTTCACAG
ACAGCTACAGGGACGACTGCTCCAGCTTAGAGCAGACCCCTCGAGCCTCCCCTGAGGTGGGCCATCTCCT
GTCCCAGGAGGATCCCAGAGATTTTCTCCCTGGGCTAGTAGCAGTCTCCCCTGGTCAGGAGCCAAGCCGT
CCCTTCAACCTGCTCCCCCTGTGTCCTGCCAAAGGCCTGGCACCTGCTGCCTGCCTCATCACATCCCCTT
GGACAGAGGGAGCTGTGGGTGGGGCTGAGAACCCCATTGTGGAACCCAAACTTGCCCAGGAGGCTGAGGG
ATCTGCTGAACCCCAGCTACCCCTTCCTTCCGTCCCCTCCCCATCCTGTGAAGGAGCCTCACTTCCCTCG
GAGGAGGCAAGCGCTCCTGACATCCTACCTGCCTCACCCACACCCGCTGCTGGCAGCTGGGTGACCGTCC
CTGAGCCAGCCCCCACCCTGGAGAGCAGCGGCAGTTCTCTGGGGCAAGAGGCACCCAGCAGCGAGGACGA
AGACACGACCGAGGCAACATCAGGAGTCTTCACCGACCTGTCCAGTGACGGCCCACACACGGAGAAGTCA
GGCATAGTACCAGCCTTGCGCAGTCTGCAGAAGCAGGTGGGGACCCCTGACTCCCTGGACTCTCTGGACA
TACCGTCCTCAGCCAGTGATGGTGGCTGTGAGGTCTTAAGCCCATCAGCTGCTGGTCCACCTGGCGGGCA
GCCCCGTGCCGTGGACAGTGGCTATGATACAGAGAACTATGAGTCTCCTGAGTTTGTGCTCAAGGAGGCC
CATGAGTCGAGTGAGCCTGAGGCCTTTGGGGAGCCAGCCTCAGAGGGTGAGAGCCCAGGGCCCGATCCTC
TGCTCTCTGTCTCCCTTGGTGGCCTCAGCAAGAAGAGCCCCTACCGAGACTCTGCCTACTTTTCAGACCT
GGATGCCGAGTCCGAACCCACCTTTGGCCCTGAGAAGCACAGTGGGATCCAGGACTCCCAAAAGGAGCAA
GACCTGAGGAGCCCACCTAGCCCAGGGCATCAGTCTGTGCAGGCTTTTCCCAGGTCTGCAGTGTCCAGCG
AGGTGCTGTCCCCTCCACAGCAGTCAGAGGAGCCCTTGCCAGAAGTCCCCAGGCCAGAGCCTCTCGGGGC
TCAAGGCCCAGTTGGAGTGCAGCCTGTGCCCGGCCCAAGTCATTCCAAATGTTTCCCGCTGACCTCCGTT
CCACTGATCTCAGAAGGCAGTGGCACGGAGCCCCAGGGTCCCTCAGGACAGCTGTCAGGGCGAGCCCAGC
AGGGGCAGATGGGCAATCCTAGCACACCCAGATCCCCGCTCTGCCTGGCCCTGCCTGGCCACCCCGGGGC
TTTGGAGGGCCGGCCGGAGGAGGATGAGGACACCGAGGACAGCGAGGAGTCTGATGAGGAGCTCCGGTGC
TACAGCGTCCAGGAGCCCAGTGAGGACAGCGAGGAGGAGCCGCCAGCGGTGCCCGTGGTGGTGGCTGAGA
GCCAGAGTGCCCGAAATCTACGCAGCCTGCTGAAGATGCCCAGCCTGCTGTCAGAGGCCTTCTGTGACGA
CCTGGAGCGCAAGAAGAAGGCTGTGTCCTTCTTCGATGATGTCACGGTCTACCTCTTTGACCAGGAAAGC
CCCACCCGAGAGACTGGGGAGCCCTTTCCCAGCACAAAGGAATCACTCCCTACGTTCCTGGAGGGTGGCC
CCAGCTCACCCAGTGCCACCGGCCTGCCACTGCGGGCTGGCCACTCTCCTGACAGCTCTGCTCCTGAACC
AGGCAGTAGGTTCGAATGGGATGGTGATTTCCCGTTGGTGCCCGGCAAGGCTGCTTTGGTGACTGAGCTG
GATCCTGCTGACCCTGTCCTGGCGGCGCCTCCCACGCCAGCTGCGCCCTTCTCACGCTTCACCGTGTCAC
CCACACCTGCCTCCCGCTTTTCCATCACCCACATATCTGACTCAGATGCCCAGTCCGTGGGAGGCCCAGC
AGCAGGTGCTGGGGGCCGATACACAGAGGCTTGA

Translation (1317 aa):
MLACLCCKKGGIGFKEFENAEGDEYVADFSEQGSPAAAAQTGPDVYVLPLTEVSLPMAKQPGRSVQLLKS
TDLGRHSLLYLKEIGHGWFGKVFLGEVHSGVSGTQVVVKELKVSASVQEQMQFLEEAQPYRALQHSNLLQ
CLAQCAEVTPYLLVMEFCPLGDLKGYLRSCRVTESMAPDPLTLQRMACEVACGVLHLHRHNYVHSDLALR
NCLLTADLTVKVGDYGLSHCKYREDYLVTADQLWVPLRWIAPELVDEVHGNLLVVDQTKSSNVWSLGVTI
WELFELGAQPYPQHSDGQVLAYAVREQQLKLPKPQLQLALSDRWYEVMQFCWLQPEQRPTAEEVHLLLSY
LCAKGTTELEEEFERRWRSLRPGGSTGLGSGSAAPAAATAASAELTAASSFPLLERFTSDGFHVDSDDVL
TVTETSHGLNFEYKWEAGCGAEEYPPSGAASSPGSAARLQELCAPDSSPPGVVPVLSAHSPSVGSEYFIR
LEGAVPAAGHDPDCAGCAPSPQAVTDQDNNSEESTVASLAMEPLLGHAPPTEGLWGPCDHHSHRRQGSPC
PSRSPSPGTPMLPAEDIDWGVATFCPPFFDDPLGASPSGSPGAQPSPSDEEPEEGKVGLAAQCGHWSSNM
SANNNSASRDPESWDPGYVSSFTDSYRDDCSSLEQTPRASPEVGHLLSQEDPRDFLPGLVAVSPGQEPSR
PFNLLPLCPAKGLAPAACLITSPWTEGAVGGAENPIVEPKLAQEAEGSAEPQLPLPSVPSPSCEGASLPS
EEASAPDILPASPTPAAGSWVTVPEPAPTLESSGSSLGQEAPSSEDEDTTEATSGVFTDLSSDGPHTEKS
GIVPALRSLQKQVGTPDSLDSLDIPSSASDGGCEVLSPSAAGPPGGQPRAVDSGYDTENYESPEFVLKEA
HESSEPEAFGEPASEGESPGPDPLLSVSLGGLSKKSPYRDSAYFSDLDAESEPTFGPEKHSGIQDSQKEQ
DLRSPPSPGHQSVQAFPRSAVSSEVLSPPQQSEEPLPEVPRPEPLGAQGPVGVQPVPGPSHSKCFPLTSV
PLISEGSGTEPQGPSGQLSGRAQQGQMGNPSTPRSPLCLALPGHPGALEGRPEEDEDTEDSEESDEELRC
YSVQEPSEDSEEEPPAVPVVVAESQSARNLRSLLKMPSLLSEAFCDDLERKKKAVSFFDDVTVYLFDQES
PTRETGEPFPSTKESLPTFLEGGPSSPSATGLPLRAGHSPDSSAPEPGSRFEWDGDFPLVPGKAALVTEL
DPADPVLAAPPTPAAPFSRFTVSPTPASRFSITHISDSDAQSVGGPAAGAGGRYTEA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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