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Report for CCDS25699.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25699.1 Public Mus musculus 11 Timp2 23 108 98 CCDS HistoryNCBI Gene:21858Re-query CCDS DB by CCDS ID:25699.1Re-query CCDS DB by GeneID:21858See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25699.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000017610.9 ENSMUSP00000017610.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000017610.9Link to Ensembl Protein Viewer:ENSMUSP00000017610.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000017610Re-query CCDS DB by Protein ID:ENSMUSP00000017610
Original member Current member NCBI NM_011594.3 NP_035724.2 Accepted alive Link to Nucleotide Sequence:NM_011594.3Link to Protein Sequence:NP_035724.2Re-query CCDS DB by Nucleotide ID:NM_011594Re-query CCDS DB by Protein ID:NP_035724Link to BLAST:NP_035724.2

Chromosomal Locations for CCDS 25699.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 118303699 118303896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 118310576 118310700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 118317419 118317527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 118320109 118320209 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 118354961 118355090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (663 nt):
ATGGGCGCCGCGGCCCGCAGCCTCCGGCTGGCGCTCGGCCTCCTGCTGCTAGCCACGCTGCTGCGCCCGG
CCGACGCCTGCAGCTGCTCCCCGGTGCACCCGCAACAGGCGTTTTGCAATGCAGACGTAGTGATCAGAGC
CAAAGCAGTGAGCGAGAAGGAGGTGGATTCCGGGAATGACATCTATGGCAACCCCATCAAGAGGATTCAG
TATGAGATCAAGCAGATAAAGATGTTCAAAGGACCTGACAAAGACATCGAGTTTATCTACACGGCCCCCT
CTTCAGCAGTGTGCGGGGTCTCGCTGGACGTTGGAGGAAAGAAGGAGTATCTAATTGCAGGAAAGGCAGA
AGGAGATGGCAAGATGCACATTACCCTCTGTGACTTCATTGTGCCCTGGGACACGCTTAGCATCACCCAG
AAGAAGAGCCTGAACCACAGGTACCAGATGGGCTGTGAGTGCAAGATCACTCGCTGTCCCATGATCCCTT
GCTACATCTCCTCCCCGGATGAGTGCCTCTGGATGGACTGGGTCACAGAGAAGAGCATCAATGGGCACCA
GGCCAAGTTCTTCGCCTGCATCAAGAGAAGTGATGGTTCTTGCGCGTGGTACCGCGGGGCGGCACCCCCC
AAGCAAGAGTTTCTTGACATCGAGGACCCGTAA

Translation (220 aa):
MGAAARSLRLALGLLLLATLLRPADACSCSPVHPQQAFCNADVVIRAKAVSEKEVDSGNDIYGNPIKRIQ
YEIKQIKMFKGPDKDIEFIYTAPSSAVCGVSLDVGGKKEYLIAGKAEGDGKMHITLCDFIVPWDTLSITQ
KKSLNHRYQMGCECKITRCPMIPCYISSPDECLWMDWVTEKSINGHQAKFFACIKRSDGSCAWYRGAAPP
KQEFLDIEDP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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