NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS25681.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25681.1 Public Mus musculus 11 Mfsd11 23 108 98 CCDS HistoryNCBI Gene:69900Re-query CCDS DB by CCDS ID:25681.1Re-query CCDS DB by GeneID:69900See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25681.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021173.13 ENSMUSP00000021173.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021173.13Link to Ensembl Protein Viewer:ENSMUSP00000021173.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000021173Re-query CCDS DB by Protein ID:ENSMUSP00000021173
Original member Current member NCBI NM_178620.4 NP_848735.1 Accepted alive Link to Nucleotide Sequence:NM_178620.4Link to Protein Sequence:NP_848735.1Re-query CCDS DB by Nucleotide ID:NM_178620Re-query CCDS DB by Protein ID:NP_848735Link to BLAST:NP_848735.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_848735.1 449 Q8BJ51-1 449 100% 0 0

Chromosomal Locations for CCDS 25681.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 116854078 116854173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116854643 116854698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116858474 116858581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116859299 116859378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116859497 116859593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116861059 116861117 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116861523 116861667 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116863906 116863946 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116865891 116865956 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116868534 116868659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116871294 116871468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116873244 116873379 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116873781 116873945 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1350 nt):
ATGTCCCCGGAGTCTAAAAAGCTTTTCAACATCGTTATTTTAGGAGTTGCCTTTATGTTTATGTTCACCG
CCTTTCAGACTTGTGGAAATGTGGCGCAAACTGTCATCAGGAGCTTAAATAGCACAGATTTTCATGGCAG
TGGATATACCAGCTTGGCAATTATTTATGGCGTGTTCTCTGCTTCAAATTTGATCACTCCGTCCGTGGTC
GCCATTGTTGGACCTCAGATCTCTATGTTTGTCAGTGGTTTGTTTTACAGCATGTACATTGCCGTTTTTA
TCCAGCCTTTCCCATGGTCCTTCTACACAGCATCTGTCTTCATCGGAATTGCCGCTGCTGTCCTTTGGAC
AGCACAAGGAAATTGCCTGACGATAAATTCTGATGAGCACACAATCGGGAGAAACAGCGGAATTTTCTGG
GCACTCTTACAGTCTAGCTTGTTCTTTGGGAATCTCTACATATATTTTGCATGGCAAGGGAAGACCCAGA
TCTCAGAGCATGACCGAAGGACAGTGTTTATTGCTCTGACAGTGATAAGCCTCGTGGGGACCGTTCTGTT
CTTTCTCATTCGGAAACCAGATCCTGAGAATGTCCTTGGAGAAGAAGAGTCTTGCGATGACCAGGACATG
GAAGCCACCGAGTCTGCCCAGAACAACGTGACAAAGGCAGTCGATGCGTTTAAAAAGTCTCTGAGGCTGT
GTGTCACCAGGGAGATGCTGCTCCTGAGCGTCACGACTGCCTACACAGGTCTGGAGCTGACCTTCTTCTC
TGGGGTGTACGGTACCTGTATTGGGGCCGTAAACAAATTTGGGACAGAAGAGAAAAGCCTCATTGGACTT
TCTGGAATTTTCATCGGCATTGGAGAGATTTTAGGTGGGAGCCTCTTCGGCCTGCTGAGCAAGAACAGTC
GCTTTGGCAGGAACCCGGTCGTGCTGCTCGGCACCCTGGTGCACTTCGTAGCCTTCTACTTGATCTTTCT
CAACATGCCCGGAGACGCGCCCATTGCCCCTGTGGAAGGGACCAACAGCATTGCATACATCAGGCCCAGC
AAAGAAGTTGCCATTCTCTGCAGTTTTCTGCTGGGTCTGGGAGACAGCTGCTTCAACACCCAGCTGCTTA
GCATTCTGGGTTTTCTCTACTCGGAAGACAGCGCGCCGGCCTTCGCGGTCTTTAAGTTTGTTCAGTCAAT
CTGCGCAGCCGTGGCCTTTTTCTACAGCAACTACCTCCTCCTCCACTGGCAGCTCCTGGTCATGGTGATA
TTTGGGTTTTTTGGAACCATTTCTTTCTTCGCTGTGGAGTGGGACGCTGCTGCCATCGTGGCCCGAGGCT
CGGACTACCGAAGCATTTGA

Translation (449 aa):
MSPESKKLFNIVILGVAFMFMFTAFQTCGNVAQTVIRSLNSTDFHGSGYTSLAIIYGVFSASNLITPSVV
AIVGPQISMFVSGLFYSMYIAVFIQPFPWSFYTASVFIGIAAAVLWTAQGNCLTINSDEHTIGRNSGIFW
ALLQSSLFFGNLYIYFAWQGKTQISEHDRRTVFIALTVISLVGTVLFFLIRKPDPENVLGEEESCDDQDM
EATESAQNNVTKAVDAFKKSLRLCVTREMLLLSVTTAYTGLELTFFSGVYGTCIGAVNKFGTEEKSLIGL
SGIFIGIGEILGGSLFGLLSKNSRFGRNPVVLLGTLVHFVAFYLIFLNMPGDAPIAPVEGTNSIAYIRPS
KEVAILCSFLLGLGDSCFNTQLLSILGFLYSEDSAPAFAVFKFVQSICAAVAFFYSNYLLLHWQLLVMVI
FGFFGTISFFAVEWDAAAIVARGSDYRSI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH