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Report for CCDS25614.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25614.2 Public Mus musculus 11 Cd300lb 23 108 98 CCDS HistoryNCBI Gene:217304Re-query CCDS DB by CCDS ID:25614.2Re-query CCDS DB by GeneID:217304See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 25614.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000239005.1 ENSMUSP00000159146.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000239005.1Link to Ensembl Protein Viewer:ENSMUSP00000159146.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000239005Re-query CCDS DB by Protein ID:ENSMUSP00000159146
Original member Current member NCBI NM_199221.3 NP_954691.3 Accepted alive Link to Nucleotide Sequence:NM_199221.3Link to Protein Sequence:NP_954691.3Re-query CCDS DB by Nucleotide ID:NM_199221Re-query CCDS DB by Protein ID:NP_954691Link to BLAST:NP_954691.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_954691.3 209 Q3U497 209 100% 0 0

Chromosomal Locations for CCDS 25614.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 114924893 114925061 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 114926024 114926114 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 114928294 114928623 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 114934209 114934248 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (630 nt):
ATGTGGCTGTCCCCAGCTTTGCTTCTTCTCAGTTTTCCAGGCTGCCTCTCCATCCAAGGCCCAGCATTGG
TGAGGGGTCCAGAGCAGGGGTCAGTGACTGTGCAATGTCGCTATAGCTCAAGATGGCAAACCAACAAGAA
GTGGTGGTGCCGGGGAGCAAGCTGGAGCACTTGCAGGGTCCTCATCCGATCCACTGGGTCAGAGAAAGAA
ACGAAGAGCGGCCGGCTGTCCATCAGGGACAATCAGAAAAATCACTCATTCCAGGTTACCATGGAGATGC
TCAGGCAAAATGACACGGACACTTACTGGTGTGGTATTGAAAAGTTCGGAACTGACCGTGGGACCAGAGT
TAAAGTGAACGTCTACTCGGTGGGTAAAGATACCATGTCGACTTCTAATCAACTTCCCTGGCCCACTGTG
GACGGCAGTACAGACATGGTGTCTTCTGACTTGCAGAAGAGGACCTATTACATGCTCCTGGTATTTGTGA
AGGTGCCTGCCTTGCTCATCTTGGTTGGTGCTGTCCTCTGGCTGAAGAGGTCAACTCAGAAGGTCCCTGA
GGAACAGTGGAGACACACTCTCTGTAGCGATTTGGACTCTGAACTTCTAGCTAAAGACATTTCTCCTTAG

Translation (209 aa):
MWLSPALLLLSFPGCLSIQGPALVRGPEQGSVTVQCRYSSRWQTNKKWWCRGASWSTCRVLIRSTGSEKE
TKSGRLSIRDNQKNHSFQVTMEMLRQNDTDTYWCGIEKFGTDRGTRVKVNVYSVGKDTMSTSNQLPWPTV
DGSTDMVSSDLQKRTYYMLLVFVKVPALLILVGAVLWLKRSTQKVPEEQWRHTLCSDLDSELLAKDISP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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