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Report for CCDS25560.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25560.1 Public Mus musculus 11 Milr1 23 108 98 CCDS HistoryNCBI Gene:380732Re-query CCDS DB by CCDS ID:25560.1Re-query CCDS DB by GeneID:380732See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25560.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000086353.10 ENSMUSP00000083538.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000086353.10Link to Ensembl Protein Viewer:ENSMUSP00000083538.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000086353Re-query CCDS DB by Protein ID:ENSMUSP00000083538
Original member Current member EBI ENSMUST00000147326.8 ENSMUSP00000138742.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000147326.8Link to Ensembl Protein Viewer:ENSMUSP00000138742.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000147326Re-query CCDS DB by Protein ID:ENSMUSP00000138742
Original member Current member NCBI NM_001033435.3 NP_001028607.1 Accepted alive Link to Nucleotide Sequence:NM_001033435.3Link to Protein Sequence:NP_001028607.1Re-query CCDS DB by Nucleotide ID:NM_001033435Re-query CCDS DB by Protein ID:NP_001028607Link to BLAST:NP_001028607.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001028607.1 246 Q3TB92-1 246 100% 0 0

Chromosomal Locations for CCDS 25560.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 106751284 106751389 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106751634 106751675 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106754782 106755051 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106761183 106761296 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106763856 106763948 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106765222 106765284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106766953 106767005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (741 nt):
ATGGGCGATGGTGACTCGCCAATGTGCCTCTCTGCCGTTTCATTCAAGGGAATAAGATGCTGGCTGGACA
AACTGTTACTTTGGGCTCTTACAATTTCTATCACACTTCAGAATGCTGCAGTGGATTGTACGAGGGTGGA
AAATAACGAATTACCTTCTCCAAATCTGAACTCAAGTATGAACGTGGTCAGGATGGGCCAAAATGTATCT
CTGTCTTGTTCCACCAAGAACACATCAGTAGACATCACCTATTCGCTCTTCTGGGGTACAAAATATCTAG
AAAGCAAGAGAAGACGAGGGGGAGCTGTGGATTTCCACCTGAGGATCTCCAATGCCAACGAGTCAGGCCC
CTACAAATGCAAAGTCAATGTTTCCAACTTGATGAAATACAGTCAGGATTTCAACTTCACAATGGCCAAA
GATGAGAGCTGCCCTTCATGCCGGCTGTCACTGTTGCTCCCAGGGCTGTTACTGGGGATACTGGTAATAG
TCCTAGTTCTGGCTTATTTGATTCATCTAAAATACAAAAAAGGAAAGAAGACTCAGAGAGAGGACCAGTC
CAAGGGTTCTGGAGATGCGCCTGCACAGGACGAGCTGTATGTCAACGCCTGCAAGACTCAGACAGAGCAA
CCCCAGGAGATACACTATGCCACTCCAGTCTTCAAGGAGATGGCACCCATGGAAGAAGAAGGTGGTACGG
ATGGAAAAGCTGATTACATCTACTCTGAACTCACCCACTGA

Translation (246 aa):
MGDGDSPMCLSAVSFKGIRCWLDKLLLWALTISITLQNAAVDCTRVENNELPSPNLNSSMNVVRMGQNVS
LSCSTKNTSVDITYSLFWGTKYLESKRRRGGAVDFHLRISNANESGPYKCKVNVSNLMKYSQDFNFTMAK
DESCPSCRLSLLLPGLLLGILVIVLVLAYLIHLKYKKGKKTQREDQSKGSGDAPAQDELYVNACKTQTEQ
PQEIHYATPVFKEMAPMEEEGGTDGKADYIYSELTH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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