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Report for CCDS25552.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25552.1 Public Mus musculus 11 Ftsj3 23 108 98 CCDS HistoryNCBI Gene:56095Re-query CCDS DB by CCDS ID:25552.1Re-query CCDS DB by GeneID:56095See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25552.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021048.6 ENSMUSP00000021048.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021048.6Link to Ensembl Protein Viewer:ENSMUSP00000021048.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000021048Re-query CCDS DB by Protein ID:ENSMUSP00000021048
Original member Current member NCBI NM_025310.3 NP_079586.1 Accepted alive Link to Nucleotide Sequence:NM_025310.3Link to Protein Sequence:NP_079586.1Re-query CCDS DB by Nucleotide ID:NM_025310Re-query CCDS DB by Protein ID:NP_079586Link to BLAST:NP_079586.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079586.1 838 Q9DBE9 838 100% 0 0

Chromosomal Locations for CCDS 25552.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 106249424 106249616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106249704 106249798 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106249873 106250056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106250155 106250254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106250348 106250433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106250562 106250836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106250906 106251023 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106251154 106251335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106252203 106252338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106252428 106252577 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106252666 106252746 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106252900 106253000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106253081 106253185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106253289 106253404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106253482 106253676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106253762 106253861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106254607 106254686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106254786 106254832 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106255320 106255425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106255585 106255651 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2517 nt):
ATGGGCAAGAAAGGCAAAGTAGGCAAGAGCCGGCGGGACAAGTTCTATCACTTGGCCAAGGAGACTGGTT
ATCGTTCGCGCTCTGCCTTCAAACTGATCCAGCTCAATCGCCGCTTTCAGTTCCTGCAGAAAGCCCGGGC
CTTGTTGGACCTGTGTGCTGCGCCTGGCGGATGGCTGCAGGTGGCTGCCAAGTTTATGCCTGTATCCAGT
CTTATTGTAGGAGTGGACCTCGTTCCAATCAAGCCTCTCCCCAATGTGGTGACTCTCCAGGAGGATATCA
CAACAGAACGCTGTAGGCAGGCCCTGAGGAAGGAGCTGAAGACCTGGAAAGTTGATGTTGTGCTCAATGA
TGGGGCTCCCAATGTGGGGGCTAGTTGGGTCCATGACGCTTACTCCCAAGCTCACCTAACTCTGATGGCT
CTGCGTTTGGCTTGTGATTTTTTGGCCCGTGGTGGTTGTTTCATCACAAAAGTCTTTCGTTCCCGAGACT
ATCAGCCCTTGCTGTGGATCTTCCAGCAGCTGTTCCACCGTGTCCAGGCCACGAAGCCCCAAGCCTCTCG
CCATGAATCTGCAGAAATCTTTGTAGTCTGTCAAGGATTCCTGGCTCCGGACAAGGTTGATGCTAAATTC
TTTGATCCCAAGTTTGCCTTTAAGGAGGTTGAAGTTCAGGCTAAAACTGTTACTGAGTTGGTGACAAAGA
AGAAGCCAAAGGCTGAAGGCTATGCCGAAGGTGACCTTACTCTTTATCACCGAACCTCAGTTACGGACTT
CTTGCGAGCTGCCAATCCTGTTGACTTCCTCTCCAAGGCCAGCGAAATCTCAATAGATGATGAAGAGTTG
GCACAGCATCCAGCTACAACTGAAGACATTAGAGTATGCTGTCAGGACATCAAAGTGCTGGGGCGAAAGG
AACTTAGGTCTCTTCTGAATTGGAGAACAAAGCTTCGGCGATATGTGGCTAAGAAGCTGAAAGAGCAAGC
AAAGGCATTGGACATCAGCCTCAGCTCAGAAGAAGAAGAAGAAGGTGATGAAGAAGAGGCAGTAGCTGAG
ACAAAGCAGGCGCCAGAGGAAGAAGAAGAGAGAGAGGAAGAACAGCTTAATCGGACTCTGGCAGAGATGA
AAGCCCAAGAAGTGGCAGAACTCAAGAGGAAGAAGAAGAAGTTGCTTCGTGAGCAGAGGAAGCAGCGGGA
GCGTGTCGAGCTGAAGATGGATCTGCCTGGGGTTTCTATTGCAGATGAGGGGGAGACAGGCATGTTCTCC
CTGCGAACCATCCGTGGCCAGCAGTTATTAGAGGAAGTAACACAAGGAGACATGAACGCTGCAGACACCT
TTCTGTCTGATCTGCCAAGGGATGACATCTATGTGTCAGATGCTGAGGACGATGATGATACTTCTCTGGA
AAGTGACCTGGATCCAGAAGAGCTGGCAGGAGTCAGGACACACTCGGATCTGAAGGAGCAGAAGTACTTG
CGGTTTACTCAAGTAGATGACAATAAAGAGGAAGAAGGAGAAAATCCATTGCTGGTACCACTGGAAGAAA
AGGCAGTACTGCAGGAAGAGCAAGCTAGCCTGTGGTTCTCCAAGGACGGCTTCAGTGGGATAGAGGATGA
TGCTGACGAAGCCCTGGAGATCAGTCAGGCACAGCTGCTGTACAAGAGCCGTCAGAAGGAGCAGCAGCCA
ACAGATCCACCTCCACCACCTACTAACTTGAAGACTGAGAAGAAATCTCCCCAGGGCCAGAATGAGGTCC
CTAAGGAGACAGAAGCCATCTTGGGGACAGAGGCTGTCACTGACCCTGGAGGGGAGGAAAGAGGCAACAG
CTCAGATAGTGACAGCAGCAGTAGTGAGGATGAAGATAGCTGGAAAGTGTCCCGTGGTGTGAAGCGAGGC
CGTGGCTCTAAGGCAGATGAGGATGGGTTTGAGGTGGTGCCTATTCAGGACCCAGTGAAATACCGAATTC
TGGACCCTGAAGGCCTTGCTCTAGGTGCTGTTATTGCCTCTTCAAAAAAGGCAAAGAGAGACCTCATAGA
TAACTCGTTCAACCGGTATGCTTTTAATGAAGAGGAGGGAGAACTTCCTGAGTGGTTTGCACAGGAAGAA
AAGCAGCATCGGATACGCCAGCTGCCTGTTGATAAGAAGGAGGTGGAACATTACCGAAAACGCTGGCGGG
AAATCAATGCACGGCCCATCAAGAAAGTAGCTGAGGCCAAGGCCAGAAAGAAACGGAGGGTGCTGAAGAA
GCTGGAACAGACCAAAAAGAAGGCAGAAGCTGTGGTGAATACAGTGGACATCTCAGAACGGGAAAAGGTG
GCACAGCTGCGAAGTCTCTACAAGAAAGCTGGACTTGGCAAGGAGAAACGCCAGGTCACTTATGTTGTAG
CCAAAAAGGGTGTAGGCCGTAAGGTCCGGAGGCCAGCTGGAGTCAAAGGTCATTTCAAGGTAGTGGACTC
TCGGATGAAGAAGGATCAGAGAGCACAACAACGGAAGGAACAGAAGAAAAAACACAAGCGCAAGTGA

Translation (838 aa):
MGKKGKVGKSRRDKFYHLAKETGYRSRSAFKLIQLNRRFQFLQKARALLDLCAAPGGWLQVAAKFMPVSS
LIVGVDLVPIKPLPNVVTLQEDITTERCRQALRKELKTWKVDVVLNDGAPNVGASWVHDAYSQAHLTLMA
LRLACDFLARGGCFITKVFRSRDYQPLLWIFQQLFHRVQATKPQASRHESAEIFVVCQGFLAPDKVDAKF
FDPKFAFKEVEVQAKTVTELVTKKKPKAEGYAEGDLTLYHRTSVTDFLRAANPVDFLSKASEISIDDEEL
AQHPATTEDIRVCCQDIKVLGRKELRSLLNWRTKLRRYVAKKLKEQAKALDISLSSEEEEEGDEEEAVAE
TKQAPEEEEEREEEQLNRTLAEMKAQEVAELKRKKKKLLREQRKQRERVELKMDLPGVSIADEGETGMFS
LRTIRGQQLLEEVTQGDMNAADTFLSDLPRDDIYVSDAEDDDDTSLESDLDPEELAGVRTHSDLKEQKYL
RFTQVDDNKEEEGENPLLVPLEEKAVLQEEQASLWFSKDGFSGIEDDADEALEISQAQLLYKSRQKEQQP
TDPPPPPTNLKTEKKSPQGQNEVPKETEAILGTEAVTDPGGEERGNSSDSDSSSSEDEDSWKVSRGVKRG
RGSKADEDGFEVVPIQDPVKYRILDPEGLALGAVIASSKKAKRDLIDNSFNRYAFNEEEGELPEWFAQEE
KQHRIRQLPVDKKEVEHYRKRWREINARPIKKVAEAKARKKRRVLKKLEQTKKKAEAVVNTVDISEREKV
AQLRSLYKKAGLGKEKRQVTYVVAKKGVGRKVRRPAGVKGHFKVVDSRMKKDQRAQQRKEQKKKHKRK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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