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Report for CCDS25506.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25506.1 Public Mus musculus 11 Ccdc103 23 108 98 CCDS HistoryNCBI Gene:73293Re-query CCDS DB by CCDS ID:25506.1Re-query CCDS DB by GeneID:73293See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25506.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021307.9 ENSMUSP00000021307.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021307.9Link to Ensembl Protein Viewer:ENSMUSP00000021307.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000021307Re-query CCDS DB by Protein ID:ENSMUSP00000021307
Original member Current member NCBI NM_028492.3 NP_082768.1 Accepted alive Link to Nucleotide Sequence:NM_028492.3Link to Protein Sequence:NP_082768.1Re-query CCDS DB by Nucleotide ID:NM_028492Re-query CCDS DB by Protein ID:NP_082768Link to BLAST:NP_082768.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082768.1 237 Q9D9P2 237 100% 0 0

Chromosomal Locations for CCDS 25506.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 102882554 102882696 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102883074 102883206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102883853 102884290 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (714 nt):
ATGGAGAAGAACGATGTAATCAACTTCAAGGCCCTGGAGAAAGAGCTGCAGGCTGCCCTTGCTGCTGACG
AGAAGTACAAAAGGGAGAACGCAGCCAAGTTACGGGCAGTTGAGCAAAGGGTGCCTTCCTATGAGGAGTT
CAGAGGTATTGTTCTTGCATCACACCTGAAACCTCTGGAACAAAAGGACAAGATGGGAGGAAAGAGATTT
GTGCCCTGGAATTGTCACACTACTCGGGAAAGGACTTCTCAAGATGTGGTCACTGAAATACCCCAGGAGA
AATCACCCTTCCAGCCCACCACCTCTGCAGAATTTTACCGTGATTGGCGGCGACACTTAAGAAGTGGGCC
AGAGCGCTACCAGGCCCTACTTCAGCTTGGGGGGCCCAAGCTGGGCCACCTCTTCCAGATGGATGTGGGC
TTTGGACTTCTTGGGGAGCTGCTGGTGGCATTGGCTGAGCACGCGAGGCTGAGCGACCGGACAGCAGTGC
TGGGGATTCTGCACAGCCTGGCTAACACTGGGCGGTTCAACTTGAACCTGAGCCTGCTGAGCCATGCAGA
GCGAGAGAGCTGCCAGCGCCTGTTTCAGAAGTTGCAAGCCATGAGCACCACCAGACCCATGCAGGAGGGC
CTCACTGTGGAGGAGCCATCTGCTGGGCTACAGGGAGAAGAAGGGCTCCTACAGGAGCTGCTAGAACTGT
ATGGAGTCCATTGA

Translation (237 aa):
MEKNDVINFKALEKELQAALAADEKYKRENAAKLRAVEQRVPSYEEFRGIVLASHLKPLEQKDKMGGKRF
VPWNCHTTRERTSQDVVTEIPQEKSPFQPTTSAEFYRDWRRHLRSGPERYQALLQLGGPKLGHLFQMDVG
FGLLGELLVALAEHARLSDRTAVLGILHSLANTGRFNLNLSLLSHAERESCQRLFQKLQAMSTTRPMQEG
LTVEEPSAGLQGEEGLLQELLELYGVH


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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