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Report for CCDS25500.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25500.1 Public Mus musculus 11 Itga2b 23 108 98 CCDS HistoryNCBI Gene:16399Re-query CCDS DB by CCDS ID:25500.1Re-query CCDS DB by GeneID:16399See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25500.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000103086.3 ENSMUSP00000099375.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000103086.3Link to Ensembl Protein Viewer:ENSMUSP00000099375.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000103086Re-query CCDS DB by Protein ID:ENSMUSP00000099375
Original member NCBI NM_010575.2 NP_034705.2 Updated not alive Link to Nucleotide Sequence:NM_010575.2Link to Protein Sequence:NP_034705.2Re-query CCDS DB by Nucleotide ID:NM_010575Re-query CCDS DB by Protein ID:NP_034705
Current member NCBI NM_010575.3 NP_034705.2 Accepted alive Link to Nucleotide Sequence:NM_010575.3Link to Protein Sequence:NP_034705.2Re-query CCDS DB by Nucleotide ID:NM_010575Re-query CCDS DB by Protein ID:NP_034705Link to BLAST:NP_034705.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034705.2 1033 Q9QUM0 1033 100% 0 0

Chromosomal Locations for CCDS 25500.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 102453461 102453517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102455564 102455680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102455899 102456000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102456230 102456346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102456965 102457084 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102457185 102457328 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102457460 102457559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102457772 102457852 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102458113 102458192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102458342 102458434 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102459873 102460020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102460138 102460205 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102460516 102460641 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102460749 102460900 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102460990 102461045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102461129 102461233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102461318 102461363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102461637 102461819 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102464940 102465151 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102465305 102465357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102465497 102465550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102465711 102465754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102465890 102465937 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102466257 102466385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102466477 102466522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102467054 102467103 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102467327 102467489 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102467593 102467690 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102467780 102467901 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102469525 102469712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3102 nt):
ATGGCCAGAGCCTCCTGCGCATGGCATTCCCTGTGGCTTCTGCAGTGGACACCACTGTTCTTGGGTCCTA
GTGCTGTTCCTCCAGTCTGGGCCTTGAACCTGGACTCTGAGAAGTTCTCCGTCTATGCAGGTCCCAATGG
CAGCCACTTTGGCTTCTCAGTGGACTTTCATAAGGACAAACATGGAAGCGTGTCCATCGTGGTGGGCGCC
CCCAGGGCCCTAAACGCAAGTCAAGAGGAGACTGGAGCCGTATTCCTGTGCCCCTGGAAGGCCAATGGTG
GCAAGTGCAACCCGTTGCTCTTCGACCTCAGGGATGAGACACGAAACCTAGGCTTCCAAATTTTCCAAAC
CTTCAAGACCGGGCAAGGACTTGGGGCGTCGGTCGTCAGCTGGAATGACGTCATTGTGGCCTGTGCCCCC
TGGCAGCACTGGAATGTCCTGGAAAAGCGCGATGAGGCAGAGAAGACTCCGGTAGGAGGCTGCTTCTTGG
CTCAGCTCCAAAGCGGGGGCCGCGCAGAGTACTCGCCCTGTCGCGCCAACACCATGAGCTCCGTTTACGC
AGAGAGTTTTCGCGGAGACAAGCGATACTGTGAAGCAGGCTTCAGCTTGGCGGTGACCCAGGCTGGGGAG
CTAGTGCTTGGAGCCCCTGGAGGCTACTTTTTTTTAGGTCTCCTGGCTCGCGTTCCAATTGAGAACATCA
TCTCCAGCTACCGCCCGGGTACCCTTTTGTGGCATGTTTCCAACCAGCGCTTCACCTACGACAACAGCAA
CCCAGTGTTTTTCGATGGTTACCGGGGATATTCGGTAGCCGTGGGCGAGTTTGATGGGGATCCGAGCACT
ACAGAGTACGTATCGGGTGCCCCCACTTGGAGCTGGACCTTGGGAGCGGTGGAAATTTTGGACTCCTACT
ACCAGCCCCTGCACCGGCTTCATGGAGAACAGATGGCTTCATATTTCGGGCACTCGGTGGCAGTCACTGA
CGTCAACGGGGACGGGAGGCATGACCTACTGGTGGGGGCTCCATTGTATATGGAGAGCAGGGCAGACCGC
AAGCTGGCCGAGGTGGGCCGCGTTTATTTGTTTCTGCAGCCTAAGGGCCCCCAAGCTCTGAGCACACCCA
CTCTCCTGCTGACTGGCACCCAGCTCTATGGGAGATTTGGATCTGCCATTGCACCCCTGGGTGACCTCAA
CCGAGACGGCTATAATGATATTGCTGTGGCTGCCCCCTATGGGGGTCCCAGTGGTCAGGGCCAAGTGCTG
ATATTCCTGGGTCAGAGTGAAGGGCTGAGTCCACGCCCCTCCCAGGTTCTGGACAGCCCCTTCCCCACAG
GCTCTGGCTTTGGCTTCTCCCTTCGTGGTGCTGTAGACATCGATGACAATGGATACCCAGACCTGATTGT
GGGAGCATATGGAGCTAGCAAGGTGGCTGTGTACAGAGCTCAGCCTGTGGTGATGGCCACTGTCCAACTG
ATGGTTCAAGACTCCCTGAATCCAACACTGAAGAACTGTGTCCTGGATCAGACCAAGACACCAGTCAGCT
GCTTCAACATCCAGATGTGTGTGGGAGCCACAGGACACAACATTCCTCAGAAGCTGCATCTAAAGGCAGA
GCTGCAGCTGGACTTACAGAAGCCCCGTCAGGGCCGCCGGGTGCTCCTGCTGGCATCCCAACAGGCGAGC
CTCACCCTGAGCCTGGACCTGGGCGGAAGAGACAAGCCTATCTGCCACACCACGGGGGCCTTCCTTCGGG
ATGAGGCCGACTTCCGGGACAAGCTGAGCCCAATTGTGCTAAGCCTCAACGTGTCGCTGCCCCCAGAAGA
GACTGGAGGAGCCCCTGCCGTGGTATTGCATGGAGAAACCCATGTCCAGGAGCAGACACGGATCATCCTG
GATTGTGGGGAAGACGACCTGTGTGTGCCACAGCTCCGGCTCACAGCTACTGCGGGGGACTCCCCACTCC
TAATCGGTGCTGACAATGTGTTGGAGCTGAAGATTGAAGCAGCCAATGATGGTGAGGGAGCCTATGAAGC
GGAGCTGGCTGTGCATCTGCCTCCAGGTGCCCACTACATGCGGGCTCTCAGCAACATTGAGGGCTTTGAG
AGGCTTGTCTGCACTCAGAAGAAAGAGAATGAGTCCAGGGTGGCCCTCTGTGAGCTGGGCAACCCCATGA
AAAAGGACACCCGGATAGGAATCACAATGCTGGTGAGTGTGGAGAACCTGGAAGAAGCTGGCGAGTCCGT
GTCCTTCCAGCTGCAGGTCAGGAGCAAGAACAGCCAGAATCCAAACAGTAAGGTCGTGATGTTGCCTGTG
GCAATCCAAGCTGAAGCCACAGTGGAGCTTCGAGGGAATTCCTTCCCTGCCTCCCTGGTGGTGGCAGCAG
AAGAAGGTGACAGGGAGCAGGAAGACTTGGACAGATGGGTCTCCAGGCTGGAGCACACCTATGAGCTCCA
CAACATTGGCCCTGGCACTGTGAATGGCCTCAGACTTCTCATCCACATTCCTGGCCAGTCCCAGCCCTCG
GATCTGCTCTACATCCTGGATGTGCAGCCGCAGGGAGGTCTCCTTTGCTCCACACAGCCATCTCCCAAGG
TGGACTGGAAACTATCCACGCCCAGCCCTTCTTCCATTCGCCCCGTCCATCACCAGCGTGAGCGCAGACA
GGCATTCCTGCAGGGGCCCAAGCCAGGGCAGCAGGACCCAGTTCTGGTGAGCTGCGACGGCTCAGCGTCC
TGTACGGTGGTGGAGTGTGAGCTGCGGGAGATGGTGCGCGGGCAGCGGGCCATGGTTACTGTGCAGGTCA
TGCTGGGGCTGTCCAGCCTCCGCCAGAGGCCGCAGGAGCAGTTTGTGCTGCAGTCGCACGCCTGGTTCAA
CGTCTCCTCCCTACCTTACTCGGTGCCGGTGGTCAGCTTGCCCAGTGGGCAAGCTCGGGTGCAGACACAG
CTGCTTCGGGCCTTGGAGGAGAGGGCCATTCCTGTCTGGTGGGTGCTGGTGGGCGTGCTGGGCGGTCTGC
TGCTGCTGACCCTGCTAGTTTTGGCCATGTGGAAGGCTGGCTTCTTCAAGCGGAATCGACCGCCTCTGGA
GGAAGATGAAGAGGAAGAGTGA

Translation (1033 aa):
MARASCAWHSLWLLQWTPLFLGPSAVPPVWALNLDSEKFSVYAGPNGSHFGFSVDFHKDKHGSVSIVVGA
PRALNASQEETGAVFLCPWKANGGKCNPLLFDLRDETRNLGFQIFQTFKTGQGLGASVVSWNDVIVACAP
WQHWNVLEKRDEAEKTPVGGCFLAQLQSGGRAEYSPCRANTMSSVYAESFRGDKRYCEAGFSLAVTQAGE
LVLGAPGGYFFLGLLARVPIENIISSYRPGTLLWHVSNQRFTYDNSNPVFFDGYRGYSVAVGEFDGDPST
TEYVSGAPTWSWTLGAVEILDSYYQPLHRLHGEQMASYFGHSVAVTDVNGDGRHDLLVGAPLYMESRADR
KLAEVGRVYLFLQPKGPQALSTPTLLLTGTQLYGRFGSAIAPLGDLNRDGYNDIAVAAPYGGPSGQGQVL
IFLGQSEGLSPRPSQVLDSPFPTGSGFGFSLRGAVDIDDNGYPDLIVGAYGASKVAVYRAQPVVMATVQL
MVQDSLNPTLKNCVLDQTKTPVSCFNIQMCVGATGHNIPQKLHLKAELQLDLQKPRQGRRVLLLASQQAS
LTLSLDLGGRDKPICHTTGAFLRDEADFRDKLSPIVLSLNVSLPPEETGGAPAVVLHGETHVQEQTRIIL
DCGEDDLCVPQLRLTATAGDSPLLIGADNVLELKIEAANDGEGAYEAELAVHLPPGAHYMRALSNIEGFE
RLVCTQKKENESRVALCELGNPMKKDTRIGITMLVSVENLEEAGESVSFQLQVRSKNSQNPNSKVVMLPV
AIQAEATVELRGNSFPASLVVAAEEGDREQEDLDRWVSRLEHTYELHNIGPGTVNGLRLLIHIPGQSQPS
DLLYILDVQPQGGLLCSTQPSPKVDWKLSTPSPSSIRPVHHQRERRQAFLQGPKPGQQDPVLVSCDGSAS
CTVVECELREMVRGQRAMVTVQVMLGLSSLRQRPQEQFVLQSHAWFNVSSLPYSVPVVSLPSGQARVQTQ
LLRALEERAIPVWWVLVGVLGGLLLLTLLVLAMWKAGFFKRNRPPLEEDEEEE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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