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Report for CCDS25473.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25473.1 Public Mus musculus 11 Rnd2 23 108 98 CCDS HistoryNCBI Gene:11858Re-query CCDS DB by CCDS ID:25473.1Re-query CCDS DB by GeneID:11858See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25473.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000001347.6 ENSMUSP00000001347.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000001347.6Link to Ensembl Protein Viewer:ENSMUSP00000001347.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000001347Re-query CCDS DB by Protein ID:ENSMUSP00000001347
Original member Current member NCBI NM_009708.2 NP_033838.1 Accepted alive Link to Nucleotide Sequence:NM_009708.2Link to Protein Sequence:NP_033838.1Re-query CCDS DB by Nucleotide ID:NM_009708Re-query CCDS DB by Protein ID:NP_033838Link to BLAST:NP_033838.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033838.1 227 Q9QYM5 227 100% 0 0

Chromosomal Locations for CCDS 25473.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 101468338 101468439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101468933 101469020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101470013 101470122 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101470718 101470852 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101471058 101471306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (684 nt):
ATGGAGGGGCAGAGTGGCCGCTGCAAGATCGTAGTGGTGGGGGACGCGGAGTGCGGCAAGACAGCGTTGC
TGCAGGTGTTCGCCAAGGACGCCTACCCCGGGAGTTATGTCCCCACGGTGTTTGAGAACTACACTGCCAG
CTTCGAGATCGACAAGCGCCGCATTGAGCTCAACATGTGGGATACTTCAGGTTCCTCTTACTATGACAAT
GTCCGGCCTCTGGCCTACCCGGATTCTGATGCTGTGCTTATCTGCTTTGACATTAGCCGGCCAGAAACAC
TGGACAGTGTCCTCAAGAAGTGGCAAGGAGAGACTCAGGAGTTTTGCCCCAATGCCAAGGTGGTGCTGGT
TGGCTGTAAGCTGGACATGCGGACTGACCTGGCCACACTGAGGGAGCTATCCAAGCAGAGACTCATCCCT
GTCACACATGAGCAGGGTACTGTGCTGGCCAAGCAAGTGGGAGCTGTGTCCTACGTTGAATGTTCCTCCC
GATCTTCTGAGCGCAGTGTCCGGGATGTCTTCCATGTGGCCACAGTGGCTTCTCTCGGCCGTGGCCATAG
GCAGCTACGTCGTACTGACTCTCGCCGGGGACTGCAGCGATCCACTCAACTGTCGGGACGGCCAGACCGG
GGAAATGAGGGCGAGATGCATAAGGATCGAGCCAAGAGCTGTAACCTCATGTGA

Translation (227 aa):
MEGQSGRCKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYYDN
VRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDLATLRELSKQRLIP
VTHEQGTVLAKQVGAVSYVECSSRSSERSVRDVFHVATVASLGRGHRQLRRTDSRRGLQRSTQLSGRPDR
GNEGEMHKDRAKSCNLM


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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