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Report for CCDS25439.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25439.1 Public Mus musculus 11 Stat5a 23 108 98 CCDS HistoryNCBI Gene:20850Re-query CCDS DB by CCDS ID:25439.1Re-query CCDS DB by GeneID:20850See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25439.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000004145.13 ENSMUSP00000004145.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000004145.13Link to Ensembl Protein Viewer:ENSMUSP00000004145.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000004145Re-query CCDS DB by Protein ID:ENSMUSP00000004145
Original member Current member EBI ENSMUST00000107356.7 ENSMUSP00000102979.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107356.7Link to Ensembl Protein Viewer:ENSMUSP00000102979.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000107356Re-query CCDS DB by Protein ID:ENSMUSP00000102979
Original member Current member NCBI NM_001362680.1 NP_001349609.1 Accepted alive Link to Nucleotide Sequence:NM_001362680.1Link to Protein Sequence:NP_001349609.1Re-query CCDS DB by Nucleotide ID:NM_001362680Re-query CCDS DB by Protein ID:NP_001349609Link to BLAST:NP_001349609.1
Original member Current member NCBI NM_011488.3 NP_035618.1 Accepted alive Link to Nucleotide Sequence:NM_011488.3Link to Protein Sequence:NP_035618.1Re-query CCDS DB by Nucleotide ID:NM_011488Re-query CCDS DB by Protein ID:NP_035618Link to BLAST:NP_035618.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001349609.1 793 P42230 793 100% 0 0
NP_035618.1 793 P42230 793 100% 0 0

Chromosomal Locations for CCDS 25439.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 100861338 100861465 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100861721 100861877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100863131 100863220 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100865331 100865505 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100874003 100874133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100874339 100874490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100874923 100875078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100875483 100875662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100876777 100876864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100876942 100877064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100879279 100879371 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100879611 100879817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100880277 100880371 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100880468 100880598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100881030 100881185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100881738 100881789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100882062 100882166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100883834 100883996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2382 nt):
ATGGCGGGCTGGATTCAGGCCCAGCAGCTTCAGGGAGATGCCCTGCGCCAGATGCAAGTGTTGTATGGGC
AGCATTTCCCCATCGAGGTCCGGCACTACCTGGCCCAGTGGATCGAGAGCCAGCCGTGGGATGCTATTGA
CTTGGATAATCCCCAGGACCGAGGTCAGGCCACCCAACTCCTGGAGGGCCTGGTGCAGGAGCTGCAGAAG
AAGGCGGAGCACCAGGTGGGGGAAGATGGGTTTTTGCTGAAGATCAAGCTGGGGCACTATGCCACACAGC
TCCAGAACACGTATGACCGCTGTCCCATGGAGCTGGTTCGCTGTATCCGTCACATTCTGTACAACGAACA
GAGGCTGGTTCGCGAAGCCAACAATTGCAGCTCCCCTGCTGGTGTCCTGGTTGACGCCATGTCCCAGAAG
CACCTTCAGATCAACCAAAGGTTTGAGGAGCTGCGCCTGATCACACAGGACACGGAGAACGAGCTGAAGA
AGCTGCAGCAGACCCAAGAGTACTTCATCATCCAGTACCAGGAGAGCCTGCGGATCCAAGCTCAGTTTGC
CCAGCTGGGCCAGCTGAACCCCCAGGAGCGCATGAGCAGGGAGACGGCCCTCCAGCAGAAGCAAGTGTCC
CTGGAGACCTGGCTGCAGCGAGAGGCACAGACACTGCAGCAGTACCGAGTGGAGCTGGCTGAGAAGCACC
AGAAGACCCTGCAGCTGCTGCGGAAGCAGCAGACCATCATCCTGGACGACGAGCTGATCCAGTGGAAGCG
GAGACAGCAGCTGGCCGGGAACGGGGGTCCCCCCGAGGGCAGCCTGGACGTGCTGCAGTCCTGGTGTGAG
AAGCTGGCCGAGATCATCTGGCAGAACCGGCAGCAGATCCGCAGGGCTGAGCACCTGTGCCAGCAGCTGC
CCATCCCAGGCCCCGTGGAGGAGATGCTGGCTGAGGTCAACGCCACCATCACGGACATCATCTCAGCTCT
GGTCACCAGCACGTTCATCATCGAGAAGCAGCCTCCTCAGGTCCTGAAGACCCAGACCAAGTTTGCGGCC
ACCGTGCGCCTGCTGGTGGGGGGAAAGCTGAATGTGCACATGAACCCCCCGCAGGTGAAGGCGACCATCA
TCAGCGAGCAGCAGGCCAAGTCCCTGCTCAAGAATGAGAACACCCGCAATGAGTGCAGCGGCGAGATCCT
GAACAACTGTTGCGTCATGGAGTACCACCAGGCCACTGGCACGCTCAGCGCCCACTTCAGAAACATGTCA
CTGAAAAGAATCAAGCGCGCCGACAGGCGTGGTGCAGAGTCGGTGACGGAGGAGAAGTTCACAGTCCTGT
TTGAGTCTCAGTTCAGCGTTGGCAGCAACGAGCTGGTGTTCCAGGTGAAGACCCTGTCCCTCCCTGTGGT
CGTTATCGTCCATGGCAGCCAGGACCACAATGCTACTGCCACCGTGCTGTGGGACAATGCCTTTGCTGAG
CCGGGCAGGGTGCCATTTGCTGTGCCTGACAAGGTGCTGTGGCCGCAGCTGTGTGAAGCGCTCAACATGA
AATTCAAGGCTGAAGTACAGAGCAACCGGGGCTTGACCAAAGAGAACCTCGTGTTCCTGGCACAGAAACT
GTTCAACATCAGCAGCAACCACCTCGAGGACTACAACAGCATGTCTGTGTCCTGGTCCCAGTTCAACCGG
GAGAACTTGCCCGGCTGGAACTACACCTTCTGGCAGTGGTTCGACGGGGTGATGGAGGTGCTGAAGAAGC
ACCATAAGCCCCATTGGAATGATGGGGCTATCCTGGGTTTCGTGAACAAGCAACAGGCCCACGACCTGCT
CATCAACAAGCCGGACGGGACCTTCCTGCTGCGCTTCAGTGACTCGGAAATCGGGGGCATCACCATTGCT
TGGAAGTTTGACTCTCCGGACCGAAACCTCTGGAATCTGAAGCCATTCACGACGCGAGATTTCTCCATTC
GGTCCCTGGCCGACCGGCTGGGGGACCTGAACTACCTTATCTACGTGTTCCCAGACCGACCCAAGGACGA
GGTCTTTGCCAAGTATTACACTCCTGTACTTGCGAAAGCAGTTGACGGATACGTGAAGCCACAGATCAAG
CAAGTGGTCCCTGAGTTCGTCAATGCATCCACAGATGCCGGAGCCAGCGCCACCTACATGGACCAGGCTC
CTTCCCCAGTCGTGTGCCCTCAACCTCACTACAACATGTACCCACCCAACCCTGACCCTGTCCTTGACCA
AGATGGCGAGTTTGACCTGGATGAGAGCATGGATGTTGCCAGGCACGTGGAAGAACTTTTACGCCGGCCC
ATGGACAGTCTCGACGCCCGCCTCTCCCCACCTGCTGGTCTCTTCACCTCCGCTAGAAGCTCCCTGTCCT
GA

Translation (793 aa):
MAGWIQAQQLQGDALRQMQVLYGQHFPIEVRHYLAQWIESQPWDAIDLDNPQDRGQATQLLEGLVQELQK
KAEHQVGEDGFLLKIKLGHYATQLQNTYDRCPMELVRCIRHILYNEQRLVREANNCSSPAGVLVDAMSQK
HLQINQRFEELRLITQDTENELKKLQQTQEYFIIQYQESLRIQAQFAQLGQLNPQERMSRETALQQKQVS
LETWLQREAQTLQQYRVELAEKHQKTLQLLRKQQTIILDDELIQWKRRQQLAGNGGPPEGSLDVLQSWCE
KLAEIIWQNRQQIRRAEHLCQQLPIPGPVEEMLAEVNATITDIISALVTSTFIIEKQPPQVLKTQTKFAA
TVRLLVGGKLNVHMNPPQVKATIISEQQAKSLLKNENTRNECSGEILNNCCVMEYHQATGTLSAHFRNMS
LKRIKRADRRGAESVTEEKFTVLFESQFSVGSNELVFQVKTLSLPVVVIVHGSQDHNATATVLWDNAFAE
PGRVPFAVPDKVLWPQLCEALNMKFKAEVQSNRGLTKENLVFLAQKLFNISSNHLEDYNSMSVSWSQFNR
ENLPGWNYTFWQWFDGVMEVLKKHHKPHWNDGAILGFVNKQQAHDLLINKPDGTFLLRFSDSEIGGITIA
WKFDSPDRNLWNLKPFTTRDFSIRSLADRLGDLNYLIYVFPDRPKDEVFAKYYTPVLAKAVDGYVKPQIK
QVVPEFVNASTDAGASATYMDQAPSPVVCPQPHYNMYPPNPDPVLDQDGEFDLDESMDVARHVEELLRRP
MDSLDARLSPPAGLFTSARSSLS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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