NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS25404.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25404.1 Public Mus musculus 11 Krt34 23 108 98 CCDS HistoryNCBI Gene:16672Re-query CCDS DB by CCDS ID:25404.1Re-query CCDS DB by GeneID:16672See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25404.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000056362.2 ENSMUSP00000056622.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000056362.2Link to Ensembl Protein Viewer:ENSMUSP00000056622.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000056362Re-query CCDS DB by Protein ID:ENSMUSP00000056622
Original member Current member NCBI NM_027563.4 NP_081839.1 Accepted alive Link to Nucleotide Sequence:NM_027563.4Link to Protein Sequence:NP_081839.1Re-query CCDS DB by Nucleotide ID:NM_027563Re-query CCDS DB by Protein ID:NP_081839Link to BLAST:NP_081839.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081839.1 392 Q9D646 392 100% 0 0

Chromosomal Locations for CCDS 25404.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 100037719 100037800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100038286 100038506 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100038703 100038828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100038919 100039080 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100039987 100040143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100040961 100041043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100041149 100041496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1179 nt):
ATGTCCTGTGAGTCTTGCCTGCCCGCCCTGAGCTGCCGCACCAGCTGCTCCTCCCGGCCCTGCGTGCCCC
CCAGCTGCCATGGCTGCACCCTGCCCGGGGCCTGCAACATCCCCGCCAATGTGGGCAACTGCAATTGGTT
CTGTGAGGGCTCCTTCAATGGCAATGAGAAGGAGACCATGCAGTTCCTGAATGACCGCCTGGCCTCCTAT
ATGGAGAAGGTGAGGCAGCTGGAGAGAGAGAATGCAGAGCTGGAATGTAGGATCCAGGAGAGGAACCAGC
AGCAGGACCCCCTGGTGTGTCCTGCCTACCAGGCCTACTTCAGGACCATTGAGGAGCTGCAGCAGAAGAT
TCTGTGTGCTAAGTCTGAGAACGCCAGGCTGGTCGTGCAGATCGACAATGCCAAGCTGGCCTCTGATGAC
TTCAGGACCAAGTACCAGACTGAGCTGTCCATGAGGCAGCTGGTGGAGGCTGACATCAACAGCCTGCGCA
GGATCCTGGATGAGCTGACCCTCTGCAAGTCTGACTTGGAGGCTCAGGTGGAGTCTCTGAGGGAGGAGCT
GCTGTGCCTCAAGAAGAACCACGAGGAGGAAGTCAACACCCTGCGCTGCCAGCTTGGAGACCGCCTCAAC
GTGGAGGTGGACGCTGCTCCCACCGTGGACCTGAACCGAGTGCTCAACGAGACCAGGTGTCAGTACGAGG
CCCTGGTGGAAACCAACCGCCGGGAAGTGGAGGAATGGTTCACCACACAGTCAGAGGAGCTGAACAAGCA
GGTGGTGTCCAGCTCAGAGCAGCTACAGTCCTGCCAGGCTGAGATCATCGAGCTAAGACGCACAGTCAAC
GCCCTGGAGATCGAGCTGCAGGCCCAGCACTGCATGAGAAACTCTCTGGAGAACACCCTGACAGAGAGTG
AGGCTCGCTACAGCTCTCAGCTGTCCCAGGTGCAGTGCCTGATCACCAACGTGGAGTCTCAGCTTGGTGA
GATCCGGGCTGACCTGGAGCGTCAGAACCAGGAGTACCAGGTGCTGCTGGATGTCCGGGCCAGGCTGGAG
TGTGAGATCAACACGTACAGGAGCCTGCTGGAGAGCGAGGACTGCAACCTCCCCTGCAACCCATGCGCCA
CCACCAATGCTAGTGGCAGTTGCTGTGGACCTTGCGGCAGCTCAAAGCGTTGCTGTTAA

Translation (392 aa):
MSCESCLPALSCRTSCSSRPCVPPSCHGCTLPGACNIPANVGNCNWFCEGSFNGNEKETMQFLNDRLASY
MEKVRQLERENAELECRIQERNQQQDPLVCPAYQAYFRTIEELQQKILCAKSENARLVVQIDNAKLASDD
FRTKYQTELSMRQLVEADINSLRRILDELTLCKSDLEAQVESLREELLCLKKNHEEEVNTLRCQLGDRLN
VEVDAAPTVDLNRVLNETRCQYEALVETNRREVEEWFTTQSEELNKQVVSSSEQLQSCQAEIIELRRTVN
ALEIELQAQHCMRNSLENTLTESEARYSSQLSQVQCLITNVESQLGEIRADLERQNQEYQVLLDVRARLE
CEINTYRSLLESEDCNLPCNPCATTNASGSCCGPCGSSKRCC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH