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Report for CCDS25377.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25377.1 Public Mus musculus 11 Krt25 23 108 98 CCDS HistoryNCBI Gene:70810Re-query CCDS DB by CCDS ID:25377.1Re-query CCDS DB by GeneID:70810See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25377.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000038004.2 ENSMUSP00000048439.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000038004.2Link to Ensembl Protein Viewer:ENSMUSP00000048439.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000038004Re-query CCDS DB by Protein ID:ENSMUSP00000048439
Original member Current member NCBI NM_133730.2 NP_598491.1 Accepted alive Link to Nucleotide Sequence:NM_133730.2Link to Protein Sequence:NP_598491.1Re-query CCDS DB by Nucleotide ID:NM_133730Re-query CCDS DB by Protein ID:NP_598491Link to BLAST:NP_598491.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598491.1 446 Q8VCW2 446 100% 0 0

Chromosomal Locations for CCDS 25377.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 99316104 99316213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 99316521 99316588 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 99317238 99317455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 99318058 99318183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 99318269 99318430 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 99321153 99321309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 99322058 99322140 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 99322475 99322891 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1341 nt):
ATGTCTCTTCGCCTTTCCAGTGGATCCAGGAGGTCCTATGCTCGCCCCAGCACAGGGTCGCTCAGGGGAG
CCAGCTTCGGAGCTGGAAATGCATGTGGCGTGGCAGGCATTGGAAGTGGCTTCTCCTGCGCCTTCGGGGG
CAGCTCCACAGGAGGAAACACGGGGGTGGCCAACTCCTGTGCTGGCTTCACTGTGAATGAGGGGGGGCTC
CTCTCCGGCAATGAGAAGGTGACCATGCAGAACCTTAATGACCGCCTGGCCTCCTACCTGGACAACGTGC
AAGCGCTGCAGGAGGCCAACGCTGACCTGGAGCAGAAGATCAAGGGCTGGTATGAAAAATTTGGACCTGG
GTCGTGCCGCGGTCTCGATCATGACTACAGTAGATACTTCCCCATCATTGATGATCTAAAAAACCAGATC
ATCACCTCCACCACCAGCAACGCCAACGCTGTACTGCAGATTGACAATGCCAGGCTCACGGCTGATGACT
TCAGACTCAAGTACGAAAACGAGCTGGCTCTCCACCAGAGCGTAGAGGCTGACGTCAACGGGCTGCGCAG
AGTTCTGGATGAAATCACCCTGTGCCGCACTGACCTGGAGATTCAGTACGAAACCCTGAGCGAGGAGCTG
ACCTATCTCAAGAAGAACCACAAAGAGGAAATGCAGGCTCTGCAGTGCGCCGCTGGAGGCAACGTGAACG
TGGAGATGAACGCAGCCCCGGGCGTGGACCTCACCGTCCTGCTGAACAACATGAGAGCTGAGTATGAGGC
CCTGGCTGAGCAGAACCGCAGGGACGCTGAGGCCTGGTTCCAAGAGAAGAGTGCTTCGCTGCAGCAGCAG
ATCACCGAGGACGTGGGTGCCACCACCTCAGCCAGGAATGAGCTCACCGAAATGAAGCGAACGCTCCAAA
CCCTGGAGATTGAACTGCAGTCTCTCCTGGCCACGAAACACTCTCTGGAGTGCTCCCTGACGGAGACCGA
GGGCAACTACTGCACGCAGCTGGCTCAGATCCAGGCTCAGATCAGCGCCCTGGAGGAGCAGCTGCACCAG
GTGAGGACGGAGACCGAGGGCCAGAAGCTGGAATATGAGCAGCTGCTGAATGTCAAGGCCCACCTGGAGA
AGGAGATCGAGACCTACTGCCTCCTCATAGGAGGAGATGAAGGGGCCTGTAAGTCTTCGAGTTACAAGTC
TAAAGATTATGGATCTGGAAACGCCGGAAACCAAATCAAAGATCCAGTCAAAGCCATAGTGGTTAAGAAG
GTTCTAGAGGAGGTGGATCAGCGCAGCAAGATACTGACCACTAGGCTCCACTCCCTGGAAGAGAAATCTC
AAAGCAATTAG

Translation (446 aa):
MSLRLSSGSRRSYARPSTGSLRGASFGAGNACGVAGIGSGFSCAFGGSSTGGNTGVANSCAGFTVNEGGL
LSGNEKVTMQNLNDRLASYLDNVQALQEANADLEQKIKGWYEKFGPGSCRGLDHDYSRYFPIIDDLKNQI
ITSTTSNANAVLQIDNARLTADDFRLKYENELALHQSVEADVNGLRRVLDEITLCRTDLEIQYETLSEEL
TYLKKNHKEEMQALQCAAGGNVNVEMNAAPGVDLTVLLNNMRAEYEALAEQNRRDAEAWFQEKSASLQQQ
ITEDVGATTSARNELTEMKRTLQTLEIELQSLLATKHSLECSLTETEGNYCTQLAQIQAQISALEEQLHQ
VRTETEGQKLEYEQLLNVKAHLEKEIETYCLLIGGDEGACKSSSYKSKDYGSGNAGNQIKDPVKAIVVKK
VLEEVDQRSKILTTRLHSLEEKSQSN


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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