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Report for CCDS25322.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25322.1 Public Mus musculus 11 Epop 23 108 98 CCDS HistoryNCBI Gene:103551Re-query CCDS DB by CCDS ID:25322.1Re-query CCDS DB by GeneID:103551See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 25322.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000052281.5 ENSMUSP00000051211.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000052281.5Link to Ensembl Protein Viewer:ENSMUSP00000051211.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000052281Re-query CCDS DB by Protein ID:ENSMUSP00000051211
Original member Current member NCBI NM_175332.3 NP_780541.2 Accepted alive Link to Nucleotide Sequence:NM_175332.3Link to Protein Sequence:NP_780541.2Re-query CCDS DB by Nucleotide ID:NM_175332Re-query CCDS DB by Protein ID:NP_780541Link to BLAST:NP_780541.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_780541.2 369 Q7TNS8 369 100% 0 0

Chromosomal Locations for CCDS 25322.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 97628172 97629281 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1110 nt):
ATGGAGACTCTGTGTCCTCCTCCCCGCCTGGCAGTGCCCGCTTCCCCGCGGGGGTCTCCCTGCTCGCCTA
CG
CCCCTGAAGCCGCGTCGGGGGACCCCAGAGTTCTCCCCACTGTGCCTGCGTGCCCTCGCCTTCTGCGC
C
CTTGCCAAACCCCGGCCGTCCTCCCTGGGCCTGGGGCCTGGAGAGCTGGCGCCGCGGACCCCGGTGCTG
CTG
GGCCCCCCGGCCTCGCCATGCACAGGAGGCTGGGCCGCGGACGGCCTGAAGCACCTCGGGGGACAGG
CC
GGGCGGCCGAGCGACGTGAGCTCCCCGGCCCGCGAGGATGCAGACGTCGCGGTGTGCCCAGGCGGTGG
A
GAGGAGGAAGAGGGCGGAGGCGGCTTCCCGCACTTCGGCGCTGGTTCCTGCGCACCTCCGGGCCGCTGC
CCT
GCTCCCCTGCGTCCTCAGGACTCTCCGACCAACCCCGCCTGGTCCCCGCCCAGGCCAGCCCGGGGTC
TT
GATGCAGCTAGCAGTCCGCCCCTTGAGCCCGGCTCCCCGCCTCCGTCGCCACCTGCGGGCCTCTCCCC
G
GAGCCTGCGCCTTCCGAGCAGCCTGTGCCGGCCTCCGAGGCTCCAGGGGGTGGAGACCCTGCGCCGACC
GCG
CCTGAGGCACCCGCGCTCAGCCCCTCGACGGCAGACGCAGCACCGGACCCGCCCCGCGATCTCCGCC
AG
GAACATTTCAACCGCCTGATCCGCCGCTCGAAACTTTGGTGTTACGCGAAGGGGTTCGCCCTGGACAC
T
CCAAGTTTGCGCCGAGGGCCCGAACGGCCCGCGGCCAAAGCCCGTGGAGCAGCCAAGAAACGACGGCGG
CCA
GCGCCGCCCCCGCCCAGTGTGCAGCCACGGCGGCCCGTCCCGACGCTTCCTACATCGAGCACCTTCA
GC
CTCCTTGACTGCTTCCCCTGTCCCCCAGCTCTGGTGGTGGAAGAGAACGGAGACCTAGGGCCGGCTTC
C
TCGCTTCGCCTCCAGGGAGACGCCAAGCCGCCGCCTGCCCACCCGCTGTGGAAGTGGCAGATGGGAGGA
CCC
GCTGTCCCTGAGCCCCCGGGTCTCAAATCCTGGTGGGTCAACTTGGAAGAACTATGA


Translation (369 aa):
METLCPPPRLAVPASPRGSPCSPTPLKPRRGTPEFSPLCLRALAFCALAKPRPSSLGLGPGELAPRTPVL
L
GPPASPCTGGWAADGLKHLGGQAGRPSDVSSPAREDADVAVCPGGGEEEEGGGGFPHFGAGSCAPPGRC
P
APLRPQDSPTNPAWSPPRPARGLDAASSPPLEPGSPPPSPPAGLSPEPAPSEQPVPASEAPGGGDPAPT
A
PEAPALSPSTADAAPDPPRDLRQEHFNRLIRRSKLWCYAKGFALDTPSLRRGPERPAAKARGAAKKRRR
P
APPPPSVQPRRPVPTLPTSSTFSLLDCFPCPPALVVEENGDLGPASSLRLQGDAKPPPAHPLWKWQMGG
P
AVPEPPGLKSWWVNLEEL




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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  VEGA Genome Browser