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Report for CCDS25319.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25319.2 Under review, update Mus musculus 11 Socs7 23 108 98 CCDS HistoryNCBI Gene:192157Re-query CCDS DB by CCDS ID:25319.2Re-query CCDS DB by GeneID:192157See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 25319.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000238729.1 ENSMUSP00000158611.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000238729.1Link to Ensembl Protein Viewer:ENSMUSP00000158611.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000238729Re-query CCDS DB by Protein ID:ENSMUSP00000158611
Original member Current member NCBI NM_138657.4 NP_619598.2 Pending alive Link to Nucleotide Sequence:NM_138657.4Link to Protein Sequence:NP_619598.2Re-query CCDS DB by Nucleotide ID:NM_138657Re-query CCDS DB by Protein ID:NP_619598Link to BLAST:NP_619598.2

Chromosomal Locations for CCDS 25319.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 97362435 97363423 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97373066 97373130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97376437 97376541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97376997 97377098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97377936 97378066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97378543 97378711 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97382900 97383028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97389112 97389247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97389566 97389686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1947 nt):
ATGCAGGGGGCCGAGCTCCGGGACGGCGAGGCGGCGGCGGCGGCCGCTTCGTACCGGGTCCTGAGCCGCC
TCCTCGGCTATGGAGAGGCCGCCCCCGAGCCAGGCCCGCCGCCGCCGCCGCCGCCCCCGGGCCACAGCCA
TGGCCCGTCGCCGCCACCACCCTTCCTCGCGCGGCCCGGCTCGCGGGGCGCCCGGCCGCCTCAGCTGATG
GTGTTCCGCAACGTGGGGCGGCCGCCGGAGGAGGAGGACGCGGAGGCGGCCCGGGAGCCGGGACCCTCGG
AACTGCTGTGTCCCCGGCACCGCTGCGCGCTGGATCCCAAGGCCCTCCCGCCGGGCTTGGCGCTCGAGCG
GACCTGGGGTCCCGTGGCTGGACTAGAGGCGCAGCTGGCGGCCCTGGGGCTCGGACAGCCGGCGGGGCCG
GGGATCAAGACTGCCGGCGGAGGCTGCTGTCCGTGCCCGTGTCCCCCGCAGCCGCCGCCGCCGCAACCCC
CGCCGCCTGCTGCCGCCCCGCAGGCCGGGGAGGACCCGACGGAGACGAGCGACGCGCTGCTGGTCCTGGA
GGGCTTGGAATCGGAGGCCGAGAGCCTGGAGACTAACAGCTGCTCGGAAGAGGAGCTCAGCAGCCCCGGC
CGTGGAGGAGGAGGAGTGGGTGGCCGGCTGCTTCTGCAGCCTCCGGGTCCCGAACTACCCCCGGTGCCCT
TTCCGCTGCAGGACTTGGTCCCTCCAGGGCGCTTGAGCCGAGGGGAGCAGCAGCAGCAGCAACCTCCCCC
ACCGCCGCCGCCTCCCGGGCCCCTCCGGCCTCTCGCAGGCCCTTCTCGGAAGGGCTCCTTCAAAATCCGC
CTCAGTCGCCTGTTTCGCACGAAGAGCTGTAACGGCGGCTCGGGCGGCGGGGATGGGACCGGCAAGAGGC
CTTCGGGAGATCTGGCAGCTTCAGCTGCGAGCCTGACCGACATGGGAGGCTCAGCGGTCCGGGAGCTGGA
TACGGGGAGGAAACCCAGGTTGACAAGAACTCAAAGTGCCTTTTCCCCGGTCTCCTTCAGCCCCCTGTTC
ACAGGTGAGACAGTATCGCTTGTGGACGTGGACATTTCTCAGCGGGGCCTGACCTCTCCACACCCTCCAA
CTCCCCCTCCTCCTCCAAGAAGAAGCCTCAGCCTCCTAGATGATATCAGTGGGACGCTGCCTACATCTGT
CCTTGTGGCTCCGATGGGGTCTTCCTTGCAGTCTTTCCCCCTACCTCCGCCTCCTCCACCCCACGCCCCA
GATGCGTTTCCCCGAATTGCTCCCATCAGAGCGTCAGAATCCCTGCACAGCCAGCCCCCTCAGCACCTCC
AGTGTCCCCTCTATCGGCCCGACTCAAGCAGCTTTGCAGCCAGCCTTCGAGAGCTGGAAAAGTGCGGCTG
GTACTGGGGACCTATGAATTGGGAAGATGCAGAGATGAAACTGAAGGGGAAGCCAGATGGTTCTTTCCTG
GTACGAGACAGCTCTGATCCTCGTTACATCCTGAGCCTCAGCTTTCGATCACAGGGTATCACCCATCACA
CTAGAATGGAGCACTATAGAGGGACTTTCAGCTTATGGTGCCATCCCAAGTTTGAGGATCGCTGTCAGTC
GGTGGTGGAGTTCATTAAGAGAGCCATCATGCACTCCAAGAACGGGAAATTTCTCTATTTCCTGAGATCC
AGGGTCCCAGGACTGCCACCAACTCCAGTACAGCTGCTCTATCCAGTGTCCAGATTCAGCAATGTCAAGT
CCCTCCAGCATCTTTGCAGATTCCGGATCCGGCAGCTTGTCCGAATAGACCATATTCCGGATCTGCCACT
GCCTAAACCTCTGATCTCTTACATTCGAAAGTTCTACTACTATGATCCTCAGGAAGAGGTGTACCTGTCC
CTAAAGGAAGCGCAGCTCATTTCCAAACAGAAACAAGAGGTGGAGCCTTCCACGTAG

Translation (648 aa):
MQGAELRDGEAAAAAASYRVLSRLLGYGEAAPEPGPPPPPPPPGHSHGPSPPPPFLARPGSRGARPPQLM
VFRNVGRPPEEEDAEAAREPGPSELLCPRHRCALDPKALPPGLALERTWGPVAGLEAQLAALGLGQPAGP
GIKTAGGGCCPCPCPPQPPPPQPPPPAAAPQAGEDPTETSDALLVLEGLESEAESLETNSCSEEELSSPG
RGGGGVGGRLLLQPPGPELPPVPFPLQDLVPPGRLSRGEQQQQQPPPPPPPPGPLRPLAGPSRKGSFKIR
LSRLFRTKSCNGGSGGGDGTGKRPSGDLAASAASLTDMGGSAVRELDTGRKPRLTRTQSAFSPVSFSPLF
TGETVSLVDVDISQRGLTSPHPPTPPPPPRRSLSLLDDISGTLPTSVLVAPMGSSLQSFPLPPPPPPHAP
DAFPRIAPIRASESLHSQPPQHLQCPLYRPDSSSFAASLRELEKCGWYWGPMNWEDAEMKLKGKPDGSFL
VRDSSDPRYILSLSFRSQGITHHTRMEHYRGTFSLWCHPKFEDRCQSVVEFIKRAIMHSKNGKFLYFLRS
RVPGLPPTPVQLLYPVSRFSNVKSLQHLCRFRIRQLVRIDHIPDLPLPKPLISYIRKFYYYDPQEEVYLS
LKEAQLISKQKQEVEPST


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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