NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS25277.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25277.1 Public Mus musculus 11 Slc35b1 23 108 98 CCDS HistoryNCBI Gene:110172Re-query CCDS DB by CCDS ID:25277.1Re-query CCDS DB by GeneID:110172See the combined annotation on chromosome 11 in Sequence Viewer

Public Note for CCDS 25277.1
The coding region has been updated to scale back the N-terminus to one that is more supported by the available transcript data and by conservation across mammals.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 25277.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021243.15 ENSMUSP00000021243.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021243.15Link to Ensembl Protein Viewer:ENSMUSP00000021243.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000021243Re-query CCDS DB by Protein ID:ENSMUSP00000021243
Original member NCBI NM_016752.3 NP_058032.3 Updated not alive Link to Nucleotide Sequence:NM_016752.3Link to Protein Sequence:NP_058032.3Re-query CCDS DB by Nucleotide ID:NM_016752Re-query CCDS DB by Protein ID:NP_058032
Current member NCBI NM_016752.4 NP_058032.3 Accepted alive Link to Nucleotide Sequence:NM_016752.4Link to Protein Sequence:NP_058032.3Re-query CCDS DB by Nucleotide ID:NM_016752Re-query CCDS DB by Protein ID:NP_058032Link to BLAST:NP_058032.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_058032.3 322 P97858-1 322 100% 0 0

Chromosomal Locations for CCDS 25277.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 95385010 95385113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 95385801 95385904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 95386486 95386616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 95387211 95387241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 95387770 95387927 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 95389080 95389206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 95390278 95390384 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 95390525 95390678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 95391488 95391540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (969 nt):
ATGGCCGCTAGTAGATCCCTGGTGCCTGATCGGCTGCGCCTGCCGCTCTGCTTCTTGGGTGTCTTTGTCT
GCTATTTCTACTATGGGATCCTGCAGGAGAAGATCACAAGAGGGAAGTATGGAGAAGGACCCAAACAGGA
GACATTCACCTTTGCCTTAACTTTGGTTTTCATCCAGTGTGTGATCAATGCTATGTTTGCCAAGATCTTG
ATCCAGTTTTTTGACACTGCCAGGGTGGATCGCACTCGGACCTGGCTCTATGCTGCCTGTTCTGTCTCCT
ATGTGGGTGCCATGGTCTCCAGCAACTCAGCCCTGCAGTTTGTCAACTATCCAACTCAGGTTCTCGGTAA
ATCCTGCAAGCCAATCCCAGTTATGCTCCTGGGAGTGACGCTCTTGAAGAAGAAGTACCCGCTGGCCAAG
TACCTGTGTGTATTGCTAATTGTGGCTGGCGTGGCTCTTTTCATGTATAAGCCCAAGAAGGTGGTTGGAA
TAGAAGAGCACACTGTTGGCTTTGGAGAGCTTCTTCTGCTCATGTCTCTGACCCTGGATGGACTGACAGG
TGTTTCCCAGGACCATATGCGGGCTCATTACCAAACAGGTTCCAACCACATGATGTTGAACATCAACCTT
TGGTCCACGTTCTTGCTTGGTGCTGGGATCCTGTTTACTGGGGAGCTCTGGGAGTTCTTGAGCTTCGCCG
AGAGGTACCCGACCATCATCTATAACATCCTGCTCTTTGGCCTGACCAGTGCCTTGGGTCAGAGCTTTAT
CTTCATGACAGTCGTGTACTTCGGTCCCCTGACCTGCTCCATCATCACCACAACCCGGAAGTTCTTCACC
ATCTTGGCTTCTGTGATCCTCTTTGCCAACCCCATCAGCTCCATGCAGTGGGTGGGCACCGTGCTGGTTT
TCCTGGGTCTCGGTCTTGATGCCAAGTTTGGGAAAGGAACAAAGAAGACCTCCCACTAG

Translation (322 aa):
MAASRSLVPDRLRLPLCFLGVFVCYFYYGILQEKITRGKYGEGPKQETFTFALTLVFIQCVINAMFAKIL
IQFFDTARVDRTRTWLYAACSVSYVGAMVSSNSALQFVNYPTQVLGKSCKPIPVMLLGVTLLKKKYPLAK
YLCVLLIVAGVALFMYKPKKVVGIEEHTVGFGELLLLMSLTLDGLTGVSQDHMRAHYQTGSNHMMLNINL
WSTFLLGAGILFTGELWEFLSFAERYPTIIYNILLFGLTSALGQSFIFMTVVYFGPLTCSIITTTRKFFT
ILASVILFANPISSMQWVGTVLVFLGLGLDAKFGKGTKKTSH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH