NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS25214.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25214.1 Public Mus musculus 11 Mtmr4 23 108 98 CCDS HistoryNCBI Gene:170749Re-query CCDS DB by CCDS ID:25214.1Re-query CCDS DB by GeneID:170749See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25214.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000103179.9 ENSMUSP00000099468.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000103179.9Link to Ensembl Protein Viewer:ENSMUSP00000099468.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000103179Re-query CCDS DB by Protein ID:ENSMUSP00000099468
Original member Current member EBI ENSMUST00000119628.7 ENSMUSP00000112902.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000119628.7Link to Ensembl Protein Viewer:ENSMUSP00000112902.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000119628Re-query CCDS DB by Protein ID:ENSMUSP00000112902
Original member Current member NCBI NM_133215.2 NP_573478.1 Accepted alive Link to Nucleotide Sequence:NM_133215.2Link to Protein Sequence:NP_573478.1Re-query CCDS DB by Nucleotide ID:NM_133215Re-query CCDS DB by Protein ID:NP_573478Link to BLAST:NP_573478.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_573478.1 1190 Q91XS1-1 1190 100% 0 0

Chromosomal Locations for CCDS 25214.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 87593431 87593433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87597196 87597285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87597615 87597731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87598863 87598945 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87600504 87600664 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87600774 87600870 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87601059 87601172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87602408 87602604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87602780 87602908 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87603388 87603499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87603987 87604182 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87604418 87604603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87604682 87604852 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87604996 87605150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87610933 87612316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87613422 87613532 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87613772 87613860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87614076 87614253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3573 nt):
ATGGGTGAGGAGGGCCCCCCCAGCCTGGAGTACATCCAAGCCAAGGATCTGTTCCCCCCCAAGGAACTGG
TG
AAGGAGGAGGAGAATCTTCAGGTACCCTTCACAGTGCTGCAGGGTGAGGGAGTGGAATTCCTGGGCCG
G
GCAACCGATGCCCTCATTGCCATCTCTAACTACCGGCTGCACATCAAGTTCAAAGACTCTGTCATCAAC
GTG
CCCCTCCGGATGATTGACAGTGTGGAAAGCCGTGATATGTTTCAGTTGCACATTGCCTGCAAGGACT
CC
AAAGTGGTGAGGTGCCACTTCTCTACTTTCAAGCAGTGCCAAGAGTGGCTCTCAAGGCTAAGCCGGGC
C
ACAGCGAGACCTGCCAAGCCCGAGGATCTCTTTGCCTTTGCCTACCATGCGTGGTGCCTGGGGCTGACC
GAG
GAGGACCAGCATACCCACCTGTGCCAGCCAGGAGAGCACATCCGATGTCGACAGGAGGCAGAGCTCG
CA
AGGATGGGTTTTGACCTGCAGAATGTCTGGAGAGTCTCGCATATCAACAGCAATTACAAGCTGTGCCC
T
AGTTACCCCCAGAAGCTGCTGGTTCCTGTGTGGATCACAGATAAAGAGCTGGAGAACGTGGCTTCTTTC
CGC
TCTTGGAAACGCATCCCTGTTGTGGTATACAGACACCTGCGCAACGGGGCTGCCATTGCTCGCTGCA
GC
CAGCCTGAGATCAGCTGGTGGGGCTGGCGCAATGCTGATGATGAATACCTCGTCACGTCCATTGCCAA
A
GCCTGCGCCTTAGACCCAGGGACAAGGGCCAGTGGGGGCTCCCTCAGCACTGGGACTAATGATGCCAGT
GAG
GCATGTGACACAGATTTCGATTCTTCTCTGACTGCATGCTCTGGGGTGGAGAGCACAGCAGCCCCAC
AG
AAACTGCTGATCCTGGATGCACGGTCCTACACAGCAGCCGTGGCTAACCGGGCCAAGGGTGGAGGCTG
T
GAATGTGAAGAATACTATCCGAACTGTGAGGTCTTGTTTATGGGAATGGCCAACATCCACGCCATCCGG
AAT
AGCTTCCAGTACCTCCGGGCTGTGTGTAGCCAGATGCCAGATCCCAGCAACTGGTTGTCGGCACTGG
AG
AGTACCAAATGGCTGCAGCACTTGTCAGTGATGCTAAAAGCAGCTGTGTTGGTAGCCAATACGGTAGA
T
CGGGAAGGCCGGCCTGTGCTGGTACACTGCTCTGACGGCTGGGACCGTACACCACAGATTGTAGCCCTG
GCC
AAAATACTACTGGATCCATATTACAGGACTCTGGAGGGCTTCCAAGTGTTAGTGGAGTCTGATTGGC
TG
GATTTCGGACACAAGTTTGGAGACCGCTGTGGCCATCAGGAAAATGCAGAGGACCAAAATGAACAGTG
T
CCTGTGTTCCTCCAGTGGCTTGATTCCGTGCATCAGCTGCTTAAGCAGTTCCCCTGCCTGTTTGAGTTC
AAT
GAAGCATTTCTGGTAAAGCTGGTGCAGCACACATACTCGTGTCTCTACGGCACATTCCTGGCCAACA
AC
CCCTGCGAGCGAGAGAAGCGCAACATCTATAAACGGACGTGCTCTGTGTGGGCACTCCTGCGAGCTGG
C
AACAAGAACTTTCATAACTTCCTCTATACACCTGGTTCAGACGTGGTCCTGCATCCTGTGTGTCATGTC
CGG
GCCCTGCACCTCTGGACAGCTGTTTATCTGCCTGCGTCATCTCCATGCACCCTTGGAGAGGAAAATA
TG
GATCTTTACCTTTCCCCAGTGGCTCAGAGCCAGGAATTTTCTGGTCGTTCTCTGGACAGGTTACCTAA
A
ACCAGATCCATGGATGATCTGCTCTCTGCCTGTGATACAAGCAGCCCCCTCACTCGTACTTCCAGCGAC
CCT
AACCTGAATAACCACTCTCAGGAGGTCAGAGGCAGCCTGGAGCCCTGGCACAGCAGTCCTGAAGGAG
CA
GAGACAGTCATAGACTCTGGAGTTGGAAGCCCACAGCTGACTGTGGGAGAAATGGGCCTTCCTCCTCC
T
CTGCCCAGTAGCCAGAAAGAGTACTTGAGCAATAAACCTTTCAAGGGTCATAAAAGTTGTTCTCTTAGT
TAT
AAGTTGCTTAATACTTCTGTGTCCTGGGAAATGAAGAGCAACACCTCTGACATCAAGGTCCTGGAAG
AA
ACTGAAGCACTGGCCCCGGACCCTTCAGCCCAAGAGGAGCAGGGTAGGACTTCTGATGGCTTAGGGAA
G
CCACCTGAACAGTTTCTAGAGAAGGAAGCTGTCAGCTCACTCTGCAGTGTCTCTAGCAAGTGTGGTGGA
GCC
TGTGATTTTCCTGAGCCTCCCCAGGACCCCCTAACAGGTACTCCCCAACAGCCCCACCTAGACTCCA
TG
CAGATCTCGCCCTCAAGGTGCACTCCAGATCACAGTCAGGGCAGCCTTTGCAACCCACCAAGTGTGGC
C
AGCCAAACTCCAGAGCCAAATACTGACCTCCTCAGCCAAGATCCCCCTGGTTCTACGGCAAGTATCTCC
CAC
CAGGAACAGCCTAGCTCTGTGCCGGATCTGATCTACAAGAAGGAGGATGCTGGCAAGAGAGGAAGTA
AG
AATGGGCAGCTGTTGGAAAATCCTCGCTTTGGAAAAATGCCATTGGAGTTGGCCCGAAAGCCAATTTC
T
CAGAGCCAGATCAGTGAGTTCTCATTTTTAGGGTCAAACTGGGACAGCTTCCAAGGGATGATGACTTCA
TTC
CCAAGCGGAGAGACCACTCCTCGGCGCCTGCTTGCTTATGGCTGTTGTAGCAAGAGGCCGAGCAATA
AG
CATATTCGAGCTGCAGGGCCCTGCCTTGGGGGCCAGTGGGCTCAGAGAGAAGGGATGAAATCTCCTGT
C
TGTTCTAGTCATTCCAATGGACACTGCACAGGCCCAGGAGGGAAGAACAACCGGATGTGGTTTTCCAGT
CAT
CCGAAGCAAGTCTCCAGCACAAAGCCTTCTCTTCTGAGCTGCCCTTCCCCAGTGCCTCCTCTCTACC
TG
GATGATGATGGACTCCCCTTTCCCACGGATGTGATCCAACACAGGTTACGGCAGATCGAAGCAGGGTA
C
AGGCAAGAGGTGGAACAGCTACGGCGACAGGTTCGAGAGCTTCAGATGAGGCTAGACATTCGTCATTGC
TGT
GCCCCTCCAGCAGAACCCCCCATGGACTATGAGGATGACTTTACGTGTTTAAAGGAGTCAGATGGCA
GT
GACACTGAAGACTTTGGCTCTGATCACAGTGAAGACTGCCTTTCAGAAGCAAGCTGGGAACCCGTTGA
T
AAGAAGGAGACTGAGGTGACTCGCTGGGTTCCAGACCATATGGCATCCCACTGCTTTAACTGTGACTGT
GAA
TTCTGGTTGGCCAAACGAAGACATCATTGCAGAAATTGTGGGAACGTATTTTGTGCTGGATGCTGCC
AC
CTTAAGCTGCCCATTCCTGATCAGCAACTCTATGACCCAGTTCTCGTCTGTAACTCATGTTATGAACA
C
ATTCAAGTATCTCGTGCCAGGGAACTCATGAGCCAACATCTGAAGAAACCCATTGCTACGGCTTCCAGT
TGA


Translation (1190 aa):
MGEEGPPSLEYIQAKDLFPPKELVKEEENLQVPFTVLQGEGVEFLGRATDALIAISNYRLHIKFKDSVIN
V
PLRMIDSVESRDMFQLHIACKDSKVV
RCHFSTFKQCQEWLSRLSRATARPAKPEDLFAFAYHAWCLGLT
E
EDQHTHLCQP
GEHIRCRQEAELARMGFDLQNVWRVSHINSNYKLCPSYPQKLLVPVWITDKELENVASF
R
SWKRIPVVVY
RHLRNGAAIARCSQPEISWWGWRNADDEYLVTSIAKACALDPGTRASGGSLSTGTNDAS
E
ACDTDF
DSSLTACSGVESTAAPQKLLILDARSYTAAVANRAKGGGCECEEYYPNCEVLFMGMANIHAIR
N
SFQYLRAVCSQMPDPS
NWLSALESTKWLQHLSVMLKAAVLVANTVDREGRPVLVHCSDGWDRTPQIVAL
A
KILLDPYYRTLE
GFQVLVESDWLDFGHKFGDRCGHQENAEDQNEQCPVFLQWLDSVHQLLKQFPCLFEF
N
EAFL
VKLVQHTYSCLYGTFLANNPCEREKRNIYKRTCSVWALLRAGNKNFHNFLYTPGSDVVLHPVCHV
R
ALHLWTAVYLPASSPCTLGEENMDLYLSPVAQSQEFSGRSLD
RLPKTRSMDDLLSACDTSSPLTRTSSD
P
NLNNHSQEVRGSLEPWHSSPEGAETVIDSGVGSPQLTVGEMGLPPPLPSSQKEYLSNKPFKGHKSCSLS
Y
KLLNTSVSWEMKSNTSDIKVLEETEALAPDPSAQEEQGRTSDGLGKPPEQFLEKEAVSSLCSVSSKCGG
A
CDFPEPPQDPLTGTPQQPHLDSMQISPSRCTPDHSQGSLCNPPSVASQTPEPNTDLLSQDPPGSTASIS
H
QEQPSSVPDLIYKKEDAGKRGSKNGQLLENPRFGKMPLELARKPISQSQISEFSFLGSNWDSFQGMMTS
F
PSGETTPRRLLAYGCCSKRPSNKHIRAAGPCLGGQWAQREGMKSPVCSSHSNGHCTGPGGKNNRMWFSS
H
PKQVSSTKPSLLSCPSPVPPLYLDDDGLPFPTDVIQHRLRQIEAGYRQEVEQLRRQVRELQMRLDIRHC
C
APPAEPPMDYEDDF
TCLKESDGSDTEDFGSDHSEDCLSEASWEPVDKKETEVTRWVPDHMASHCFNCDC
E
FWLAKRRHHC
RNCGNVFCAGCCHLKLPIPDQQLYDPVLVCNSCYEHIQVSRARELMSQHLKKPIATASS



Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser