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Report for CCDS25151.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25151.1 Public Mus musculus 11 Fndc8 23 108 98 CCDS HistoryNCBI Gene:78919Re-query CCDS DB by CCDS ID:25151.1Re-query CCDS DB by GeneID:78919See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 25151.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000018988.5 ENSMUSP00000018988.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000018988.5Link to Ensembl Protein Viewer:ENSMUSP00000018988.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000018988Re-query CCDS DB by Protein ID:ENSMUSP00000018988
Original member Current member NCBI NM_030224.1 NP_084500.1 Accepted alive Link to Nucleotide Sequence:NM_030224.1Link to Protein Sequence:NP_084500.1Re-query CCDS DB by Nucleotide ID:NM_030224Re-query CCDS DB by Protein ID:NP_084500Link to BLAST:NP_084500.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_084500.1 321 Q9D2H8-1 321 100% 0 0

Chromosomal Locations for CCDS 25151.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 82892195 82892400 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 82897552 82897921 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 82898594 82898830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 82899520 82899672 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (966 nt):
ATGGCGACGGTATTCTGTAAAGTGGGGGGTGGAGAGGAGGCTGTACCGAAGAAGGAAGCCCTCAATGTTA
TCAATGTGATTGACCAACTGCCAAAGCCCTGTCCAAATCCTAAGTTTATTAACCGGTCCATGGCTACCAA
AGGCCTCCTGCTCCCGTCAAGACGCAGCTTGGCCAGCTTCTCAGAGGAAGAAAACACCGATGTCATGATG
CATATGCCAGTGGAAGATTCAGAGTACAGCTCGGATGACACGAGTATGTCCCCGATTCCGTCCACTCTGA
TGAACCCCATCAAAATGGCTGTGACCCAGCCCAATAGCAGCTTCTTTGCCGGCATCCTGGAGGGGGAGCT
GAACAAACTCAGTTTGGCATCAGTGGTCAAGAACACAGAAAAGGATAATCTGGCCATCTGCCCCCGTTCA
TCTAAGTCCCAAATAGCCACCAGGGGCCTATTGGACCTTGACAACCCTGCCCTGGACACAGACACCTCCT
CAACACGCTCTGAGTCTTCTGTGGTCCTGGATGTGCCAGAGGTTCCGTTCATTTGTGAACACACTGTTGG
CGATTCCACAGCTGTGATTTCCTGGACTTACGCTGCAGGCAAGCAGCAGGTCAGTTTCTACCAGGTGCTG
CTGCAGGAGGCAACCAAACCAGCTGACAAGGACACGCCCAAGATCAAGACCCGCCCCTGGATCTTCAACA
AGATCCTGGGTACCACTGTCAAGCTGATGGAGCTGAAGTCAAACACGAGTTACTGCCTTACCGTCCGGGC
CGCCAACACAGCAGGGGTAGGGAAGTGGTGCAAGCCCTATAAGTTTGCAACCGTGTCTACTGACTTCAAC
AGCTTTCCTGAGACCAATCCCATCCAGGTCACCGTGCAACGCAAACAACCTCATCGGAGGACCGTGTCCA
TGACAATGGAGGAGATGCGAAGGCTGGAGGATCTGGAATACTTATATCCATATTAA

Translation (321 aa):
MATVFCKVGGGEEAVPKKEALNVINVIDQLPKPCPNPKFINRSMATKGLLLPSRRSLASFSEEENTDVMM
HMPVEDSEYSSDDTSMSPIPSTLMNPIKMAVTQPNSSFFAGILEGELNKLSLASVVKNTEKDNLAICPRS
SKSQIATRGLLDLDNPALDTDTSSTRSESSVVLDVPEVPFICEHTVGDSTAVISWTYAAGKQQVSFYQVL
LQEATKPADKDTPKIKTRPWIFNKILGTTVKLMELKSNTSYCLTVRAANTAGVGKWCKPYKFATVSTDFN
SFPETNPIQVTVQRKQPHRRTVSMTMEEMRRLEDLEYLYPY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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