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Report for CCDS25122.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25122.1 Public Mus musculus 11 Evi2a 23 108 98 CCDS HistoryNCBI Gene:14017Re-query CCDS DB by CCDS ID:25122.1Re-query CCDS DB by GeneID:14017See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25122.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000103236.3 ENSMUSP00000099526.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000103236.3Link to Ensembl Protein Viewer:ENSMUSP00000099526.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000103236Re-query CCDS DB by Protein ID:ENSMUSP00000099526
Original member Current member EBI ENSMUST00000170799.7 ENSMUSP00000125936.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000170799.7Link to Ensembl Protein Viewer:ENSMUSP00000125936.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000170799Re-query CCDS DB by Protein ID:ENSMUSP00000125936
Original member Current member NCBI NM_001033711.1 NP_001028883.1 Accepted alive Link to Nucleotide Sequence:NM_001033711.1Link to Protein Sequence:NP_001028883.1Re-query CCDS DB by Nucleotide ID:NM_001033711Re-query CCDS DB by Protein ID:NP_001028883Link to BLAST:NP_001028883.1
Original member Current member NCBI NM_010161.3 NP_034291.1 Accepted alive Link to Nucleotide Sequence:NM_010161.3Link to Protein Sequence:NP_034291.1Re-query CCDS DB by Nucleotide ID:NM_010161Re-query CCDS DB by Protein ID:NP_034291Link to BLAST:NP_034291.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001028883.1 223 P20934 223 100% 0 0
NP_034291.1 223 P20934 223 100% 0 0

Chromosomal Locations for CCDS 25122.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 79527111 79527782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (672 nt):
ATGGAGCACAAAGGACAGTACCTGCATCTTGTTTTCCTGATGACAACAGTGTGGGCCTCGTCGTCTTCTG
GAACAAGACCAAACTACACACACCTGTGGGCTAGCAGTGTCACTGCCTCAGGTTCCAGTAATCAGAATGG
CTCCAGCAGACATCCGAGTGACAATAACACAAACCTTGTCACTCCTGCCGTGGGTCACAAGGTGAGCGCC
ACAGACAAGCCTGCATCATCTCCCCCTGTGCCTTTAGCTTCCACATCTACACTCAAGTCCTCCACGCCCC
ATGCCTTCAGAAACAGTTCTCCAACAGCAGAGATCAAAAGTCAGGGGGAAACGTTTAAAAAGGAAGTCTG
TGAGGAGAACACCAGCAACACGGCCATGCTAATTTGCTTAATTGTAATTGCAGTGCTTTTCCTTATCTGT
ACCTTTCTATTTCTATCAACTGTGGTTCTGGCAAACAAAGTCTCATCTCTCAAAAGGTCAAAGCAAGTAG
GCAAGCGCCAGCCGCGGAGCAACGGTGACTTTCTGGCAAGTAGTGGGCTCTGGACTGCTGAGTCGGACAC
TTGGAAAAGAGCAAAGGAGCTCACAGGCTCCAACCTCCTATTGCAATCTCCTGGTGTGCTTACAGCAGCC
AGGGAGAGAAAGCACGAAGAAGGAACTGAAAAACTCAACTAG

Translation (223 aa):
MEHKGQYLHLVFLMTTVWASSSSGTRPNYTHLWASSVTASGSSNQNGSSRHPSDNNTNLVTPAVGHKVSA
TDKPASSPPVPLASTSTLKSSTPHAFRNSSPTAEIKSQGETFKKEVCEENTSNTAMLICLIVIAVLFLIC
TFLFLSTVVLANKVSSLKRSKQVGKRQPRSNGDFLASSGLWTAESDTWKRAKELTGSNLLLQSPGVLTAA
RERKHEEGTEKLN


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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