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Report for CCDS25081.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25081.1 Public Mus musculus 11 Trp53i13 23 108 98 CCDS HistoryNCBI Gene:216964Re-query CCDS DB by CCDS ID:25081.1Re-query CCDS DB by GeneID:216964See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 25081.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000060417.10 ENSMUSP00000057592.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000060417.10Link to Ensembl Protein Viewer:ENSMUSP00000057592.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000060417Re-query CCDS DB by Protein ID:ENSMUSP00000057592
Original member Current member NCBI NM_001024920.1 NP_001020091.1 Accepted alive Link to Nucleotide Sequence:NM_001024920.1Link to Protein Sequence:NP_001020091.1Re-query CCDS DB by Nucleotide ID:NM_001024920Re-query CCDS DB by Protein ID:NP_001020091Link to BLAST:NP_001020091.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001020091.1 385 Q5F267 385 100% 0 0

Chromosomal Locations for CCDS 25081.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 77508265 77508377 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 77508457 77508991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 77509076 77509273 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 77509598 77509726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 77512653 77512694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 77512897 77512965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 77513160 77513231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1158 nt):
ATGGTTCATCCTCCTCCACCTCCGCCCCGGTTGCTTCTGGTAGCCCTGGTGGGGCTCCTGAGCCTTCGCG
AGGTGGTGGCTGAGCCGGCGGAGGAGGCAGGAACCCCTTGTCCTGAAGGCCTGTGGCCTGTGCCTCCACA
GGTGTTACCAAGAGTGACTTACACACAGGTGAGCCAAGGACAGGCTGAGGGTATCGCCTTCTTCTACCAC
CCCTGTGCCCACCCCTGGCTGAAGCTCCAGCTTGCACTCTTGGCCCACCTGTATGTGGCTAAGCCCACGC
TCATTCCTGACTTCAGTCTCACGTGGGACCGGCCCTTGGTGCTGACAGCATGGGGGACTGCACTGGAGCT
GGCATGGATAGAGCCAGCCTGGGTTGCCCACTGGCTGAAGAGGCAGCGGCGGCGGAAGCAGAGAAAGAGT
GTGTGGTTTCTCTCTGACAATCTTTTTGGGCCCACTCCCACGATGCCAGCCTCCAGAAGAGGGAAGCTGT
GTGGGAGACGGTGTGTACAGGCCCCGACTCTGGCCTTTGCTCTACGGAGCTGGCGACCTCCTGGTGCACA
GGTGACATCTAGAGGATCCGGGCGGTCCTCGATCAGTGTTGTGAAGAGAAGGGGTCTCCGGGCTGCCCTT
GGTCTCCAATCCACGCCCCCAGGCCTGAGGGTTTCCTTGGCCTCTTCACAGAGCCTGAAGGCCCAGCAGT
TGACTTTGGGAACCTCATCTGTGGCCCCGGTCTCCTTAACGACTGGGGGACCTGGAGGCAATGGTAGGTC
CAGGACAGAGGCTCAGATGCCCAGTGGGCAAGGCAACCATGGAGGTTGTGCCTGTCCGGGTCAGGTTTCC
CCAGCTCCTCGGGCCGCAGGGCCTCCCCGGGTAGCCCGAGGGCCCACTCCACGTACTGAAGAGGCGGCTT
GGGCTGCCATGGCCCTGACCTTCCTACTAGTCCTGCTCACCTTGGCCACACTTTGCACGCGACTGCACCG
GAATTTCCGCAGGAGCGAGAGTATCTATTGGGGGCCCACGGCAGACAGCCAGGACACCGTGGCTGCTCTC
CTGAAACGGAGGCTGCCTTTGCCTTCGCGCCGGATCAAGCGGTCTCGCAGACGGCCCCTGCTCCCACCCA
CACCGGATAGTGGCCCTGATTCGGAGAGCTCCGACTGA

Translation (385 aa):
MVHPPPPPPRLLLVALVGLLSLREVVAEPAEEAGTPCPEGLWPVPPQVLPRVTYTQVSQGQAEGIAFFYH
PCAHPWLKLQLALLAHLYVAKPTLIPDFSLTWDRPLVLTAWGTALELAWIEPAWVAHWLKRQRRRKQRKS
VWFLSDNLFGPTPTMPASRRGKLCGRRCVQAPTLAFALRSWRPPGAQVTSRGSGRSSISVVKRRGLRAAL
GLQSTPPGLRVSLASSQSLKAQQLTLGTSSVAPVSLTTGGPGGNGRSRTEAQMPSGQGNHGGCACPGQVS
PAPRAAGPPRVARGPTPRTEEAAWAAMALTFLLVLLTLATLCTRLHRNFRRSESIYWGPTADSQDTVAAL
LKRRLPLPSRRIKRSRRRPLLPPTPDSGPDSESSD


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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