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Report for CCDS25063.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25063.1 Public Mus musculus 11 Glod4 23 108 98 CCDS HistoryNCBI Gene:67201Re-query CCDS DB by CCDS ID:25063.1Re-query CCDS DB by GeneID:67201See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25063.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000017430.11 ENSMUSP00000017430.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000017430.11Link to Ensembl Protein Viewer:ENSMUSP00000017430.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000017430Re-query CCDS DB by Protein ID:ENSMUSP00000017430
Original member Current member NCBI NM_026029.3 NP_080305.2 Accepted alive Link to Nucleotide Sequence:NM_026029.3Link to Protein Sequence:NP_080305.2Re-query CCDS DB by Nucleotide ID:NM_026029Re-query CCDS DB by Protein ID:NP_080305Link to BLAST:NP_080305.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080305.2 298 Q9CPV4-1 298 100% 0 0

Chromosomal Locations for CCDS 25063.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 76221966 76222031 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 76233022 76233108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 76233202 76233315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 76233900 76233986 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 76234389 76234525 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 76237669 76237813 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 76239452 76239572 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 76240873 76240922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 76243555 76243644 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (897 nt):
ATGGCCACTCGTCGAGCTCTGCACTTCGTTTTCAAAGTGAAGAACCGCTTCCAGACAGTGCATTTCTTTC
GAGATGTCCTGGGGATGCAGGTTCTCCGCCATGAGGAATTTGAAGAAGGCTGCAAAGCTGCATGCAATGG
GCCTTATGATGGGAAGTGGAGTAAAACAATGGTGGGATTTGGGCCCGAGGATGATCATTTTGTTGCAGAA
TTGACATACAATTATGGCATCGGAGACTACAAGCTTGGCAATGACTTCATGGGAATCACGCTTGCTTCTA
GCCAAGCTGTCAGCAATGCCAGGAAGCTGGAGTGGCCACTGAGTAAAGTTGCAGAAGGGATTTTTGAAAC
TGAAGCCCCAGGAGGATATAAGTTCTACTTACAGGATAGAAGCCCATCTCAGTCAGATCCTGTATTAAAG
GTGACTCTAGCAGTGTCTGATCTCCAGAAGTCCTTGAACTACTGGTCTAATCTCCTGGGAATGAAAATTT
ATGAGCAAGATGAGGAAAAGCAACGAGCTTTGCTGGGCTACGCTGATAACCAGTGTAAGCTAGAGCTACA
GGGCATCCAGGGTGCAGTTGATCATGCAGCGGCCTTTGGAAGAATTGCCTTTTCTTGTCCTCAGAAAGAG
TTGCCAGACTTAGAAGACTTGATGAAAAGGGAGAGCCACTCGATCCTGACTCCGTTGGTGAGTCTGGACA
CCCCAGGGAAAGCCACAGTGCAAGTGGTCATCCTGGCTGACCCTGATGGACATGAAATTTGCTTTGTTGG
GGATGAAGCTTTTCGAGAACTCTCTAAGATGGATCCAAAAGGAAGCAAATTATTGGATGATGCAATGGAA
GCAGACAAAAGTGACGAGTGGTTTGCTACGAGGAATAAACCAAAGGCTTCGGGTTAG

Translation (298 aa):
MATRRALHFVFKVKNRFQTVHFFRDVLGMQVLRHEEFEEGCKAACNGPYDGKWSKTMVGFGPEDDHFVAE
LTYNYGIGDYKLGNDFMGITLASSQAVSNARKLEWPLSKVAEGIFETEAPGGYKFYLQDRSPSQSDPVLK
VTLAVSDLQKSLNYWSNLLGMKIYEQDEEKQRALLGYADNQCKLELQGIQGAVDHAAAFGRIAFSCPQKE
LPDLEDLMKRESHSILTPLVSLDTPGKATVQVVILADPDGHEICFVGDEAFRELSKMDPKGSKLLDDAME
ADKSDEWFATRNKPKASG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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