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Report for CCDS25058.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25058.1 Public Mus musculus 11 Rph3al 23 108 98 CCDS HistoryNCBI Gene:380714Re-query CCDS DB by CCDS ID:25058.1Re-query CCDS DB by GeneID:380714See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25058.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000066504.10 ENSMUSP00000064202.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000066504.10Link to Ensembl Protein Viewer:ENSMUSP00000064202.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000066504Re-query CCDS DB by Protein ID:ENSMUSP00000064202
Original member Current member EBI ENSMUST00000121287.7 ENSMUSP00000113869.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000121287.7Link to Ensembl Protein Viewer:ENSMUSP00000113869.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000121287Re-query CCDS DB by Protein ID:ENSMUSP00000113869
Original member Current member NCBI NM_029548.4 NP_083824.1 Accepted alive Link to Nucleotide Sequence:NM_029548.4Link to Protein Sequence:NP_083824.1Re-query CCDS DB by Nucleotide ID:NM_029548Re-query CCDS DB by Protein ID:NP_083824Link to BLAST:NP_083824.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083824.1 302 Q768S4-1 302 100% 0 0

Chromosomal Locations for CCDS 25058.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 75832180 75832214 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 75833402 75833548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 75834763 75834876 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 75854304 75854478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 75878949 75879035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 75906518 75906647 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 75908911 75909054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 75910950 75911026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (909 nt):
ATGGCTGACACCATCTTCAGCAGTGGAAATGATCAGTGGGTTTGCCCCAACGATCGGCAGCTTGCTCTGA
GAGCCAAGCTGCAGACGGGCTGGTCTGTGCACACGTACCAGACGGAGAAGCAGAGGAGGAGCCAGTGCCT
GAGCCCCGGAGAGCTGGAGATCATCCTTCAGGTCATCCAGAGAGCAGAGAGGCTAGACATCCTGGAGCAG
CAGAGAATTGGGCGGCTGGTGGAGCGGCTGGAGACAATGCAGAGGAACGTGATGGGCAACGGTCTCTCCC
AGTGTCTGCTCTGCGGGGAGGTGCTGGGATTCCTGGGCAGCTCCTCCGTATTCTGCAAAGACTGCAGGAA
GAAAGTCTGCACCAAGTGTGGGATCGAGGCTTCCCCCGGCCAGAAGCGGCCCCTGTGGCTGTGTAAGATC
TGCAGTGAGCAGAGAGAGGTCTGGAAGAGGTCAGGGGCCTGGTTCTACAAAGGGCTCCCCAAGTACATCT
TGCCCCTGAAAACCCCTGGCCGGGCTGATGATCCCCACTTCCGACCTCTGCCTGTGGAGCCCACAGAAAC
ACAGCCTCCGAGTGCTGAAACCAGCCGTGTCTACACATGGGCCCGAGGGAGAGTGGTTTCCAGTGACAGT
GACAGTGACTCAGATCTCAGCTCCTCCAGCCTGGAGGACAGACCCTTGCCCTCTGGGGTCAAGGGCACAA
AAGGTGACAAGCCTAGAGGGGACTCAGGTGCCAGCATGGAGTCACCCAGGCTGGGGCCTGCCCGTCCACC
CAGCCATCTCTCGGGCAGTCAGAGCAGCCTAGGCAGTGAGGCTGGGACAGGTGCTACAGAGCCACAGGGA
GGCACCCCAGCCCAGCCTGAGCCCAGGGTACCCGGCAAAAGACACACATGGGCAACTCCCCGCTACTGA

Translation (302 aa):
MADTIFSSGNDQWVCPNDRQLALRAKLQTGWSVHTYQTEKQRRSQCLSPGELEIILQVIQRAERLDILEQ
QRIGRLVERLETMQRNVMGNGLSQCLLCGEVLGFLGSSSVFCKDCRKKVCTKCGIEASPGQKRPLWLCKI
CSEQREVWKRSGAWFYKGLPKYILPLKTPGRADDPHFRPLPVEPTETQPPSAETSRVYTWARGRVVSSDS
DSDSDLSSSSLEDRPLPSGVKGTKGDKPRGDSGASMESPRLGPARPPSHLSGSQSSLGSEAGTGATEPQG
GTPAQPEPRVPGKRHTWATPRY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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