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Report for CCDS25030.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25030.1 Public Mus musculus 11 Or3a1 23 108 98 CCDS HistoryNCBI Gene:258702Re-query CCDS DB by CCDS ID:25030.1Re-query CCDS DB by GeneID:258702See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 25030.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000052254.4 ENSMUSP00000050456.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000052254.4Link to Ensembl Protein Viewer:ENSMUSP00000050456.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000052254Re-query CCDS DB by Protein ID:ENSMUSP00000050456
Original member Current member EBI ENSMUST00000214490.1 ENSMUSP00000150291.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000214490.1Link to Ensembl Protein Viewer:ENSMUSP00000150291.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000214490Re-query CCDS DB by Protein ID:ENSMUSP00000150291
Original member Current member EBI ENSMUST00000213831.1 ENSMUSP00000150765.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000213831.1Link to Ensembl Protein Viewer:ENSMUSP00000150765.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000213831Re-query CCDS DB by Protein ID:ENSMUSP00000150765
Original member Current member NCBI NM_146707.1 NP_666918.1 Accepted alive Link to Nucleotide Sequence:NM_146707.1Link to Protein Sequence:NP_666918.1Re-query CCDS DB by Nucleotide ID:NM_146707Re-query CCDS DB by Protein ID:NP_666918Link to BLAST:NP_666918.1

Chromosomal Locations for CCDS 25030.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 74334282 74335229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (948 nt):
ATGCAGCCAAAGCCTAGAGCCAATGGAACCACTATTACTGAATTCATTCTGCTGGGTTTGGTGGAGACAC
CAGAGCTGTGGCCACTTGTCTTCATACTCTTCCTCTTGGCTTACATGACAACAGTTGGAGGTAACCTGAG
CATCCTGGCTGCTGTCTTGGTGGAACCCAAACTGCACACCCCCATGTACTTCTTCCTGGGGAATCTGTCA
GTGATGGATGTGGGGTGTATCAGTGTCACTATTCCCTCCATGTTGGTTCGGCTCTTAGTCCATAAGCGTA
CAATTCCATATGGAGACTGCCTCACACAGCTCTTCTTCTTCCATCTGCTAGTTGGGGTTGACTGCTTCCT
ATTGACAGCCATGGCTTATGATCGCTTCCTGGCCATCTGCCGGCCCCTCACTTACAGCACCCGAATGAAC
CACACTATCCAGAGGATCTTGGTGGCTACGTCCTGGGCTTGTGCCTTCAGCAATGCACTGACTCACACTG
TAGCCATATCCACACTTCACTTCTGTGGCCCCAATGTGATCAATCACTTCTACTGTGACTTGCCTCAGCT
CTTCCAGCTGTCCTGCTCCAGTACCCAGCTCAATGAGCTGTTGCTCTTTGGAGTGGGTTTCATCATGGCA
GGAACCCCCATGGCACTCATTTTCACCTCTTATATGCATGTGGCAGCTGCAGTTCTGCGAATCCGCTCTG
CTGAAGGCAGAAAGAAAGCTTTCTCCACATGCAGCTCTCACCTCACTGTGGTTGCCATATTCTATGGTGC
TGGCATCTTTAACTACATGAGACTTGGTTCCACCAAACTTTCAGATAAGGATAAAGCTATTGGTATTTTC
AACACTGTCATCAACCCTATGCTGAACCCACTCATCTACAGTCTCAGGAACCCTGATGTGCAGGCTGCCC
TCTGGAGGGTACTCACAGGGAGACGGCCAGCAGCTTGA

Translation (315 aa):
MQPKPRANGTTITEFILLGLVETPELWPLVFILFLLAYMTTVGGNLSILAAVLVEPKLHTPMYFFLGNLS
VMDVGCISVTIPSMLVRLLVHKRTIPYGDCLTQLFFFHLLVGVDCFLLTAMAYDRFLAICRPLTYSTRMN
HTIQRILVATSWACAFSNALTHTVAISTLHFCGPNVINHFYCDLPQLFQLSCSSTQLNELLLFGVGFIMA
GTPMALIFTSYMHVAAAVLRIRSAEGRKKAFSTCSSHLTVVAIFYGAGIFNYMRLGSTKLSDKDKAIGIF
NTVINPMLNPLIYSLRNPDVQAALWRVLTGRRPAA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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