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Report for CCDS25010.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25010.1 Public Mus musculus 11 Or1e21 23 108 98 CCDS HistoryNCBI Gene:259027Re-query CCDS DB by CCDS ID:25010.1Re-query CCDS DB by GeneID:259027See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 25010.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000075532.1 ENSMUSP00000074971.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000075532.1Link to Ensembl Protein Viewer:ENSMUSP00000074971.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000075532Re-query CCDS DB by Protein ID:ENSMUSP00000074971
Original member Current member EBI ENSMUST00000121209.2 ENSMUSP00000112462.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000121209.2Link to Ensembl Protein Viewer:ENSMUSP00000112462.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000121209Re-query CCDS DB by Protein ID:ENSMUSP00000112462
Original member Current member EBI ENSMUST00000127789.2 ENSMUSP00000116228.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000127789.2Link to Ensembl Protein Viewer:ENSMUSP00000116228.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000127789Re-query CCDS DB by Protein ID:ENSMUSP00000116228
Original member Current member NCBI NM_147025.1 NP_667236.1 Accepted alive Link to Nucleotide Sequence:NM_147025.1Link to Protein Sequence:NP_667236.1Re-query CCDS DB by Nucleotide ID:NM_147025Re-query CCDS DB by Protein ID:NP_667236Link to BLAST:NP_667236.1

Chromosomal Locations for CCDS 25010.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 73453275 73454210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (936 nt):
ATGATAAAGAACAACCAAACTCTCTTCAACCAGTTCCTCCTCCTGGGCCTGCCGATCCCTGCAGAGCACC
AGCAACTGTTCTTTGCCCTGTTCCTGTCCATGTACCTCACCACCATCCTGGGGAACCTCATCATCATCAT
CCTCATTCGACTGGACTCCCATCTCCACACACCCATGTACTTGTTTCTCAGCAACTTGTCCTTCTCTGAT
CTCTGCTTTTCCTCTGTCACAATGCCCAAGTTGCTGCAGAACATGCAGAGCCAGGACACATCCATCACCT
ATGCAGGCTGCCTGACACAAATGTACTTTTTTGTTCTTTTTGGAGGCCTGGAAATCTTCCTCCTTGTGGT
CATGGCCTATGACCGCTATGTGGCCATCTGCCTTCCCCTTCACTACACCAGCATCATGAGTCTCAAGCTC
TGTGTGTGTCTGGTGCTGCTGTCCTGGGTGATTAGTATACTGAATTCCATGTTACACACTCTACTCTTGG
CTAGGTTGTCATTCTGTGAGGACAACATGATCCGCCACTTTTTCTGTGACATGTCTGCCCTGCTCAAGTT
GGCCTGCTCTGATATTTATATAAATGAACTTATGATATTTATCTTGGGAGGACCCCTTATGGTCATTCCA
TTCTTACTCATTGTTATGTCCTATGTACAAATTATCTTCTCTATTCTAAAGGCTTCATCTACTCGGGCCA
TCTACAAGGTCTTCTCTACCTGTGGCTCCCACCTGACTGTGGTGTCACTATTCTATGGGACAATTATTGG
TCTCTACTTATGTCCATCAGCTAATAACTTTACAGCAAAGGAGGCTTCTATTGCCATAATGTACACAGTG
GTGACTCCCATGCTAAACCCTTTCATCTATAGCCTGAGGAACAGAGATATAAAGGAGGCCCTTATAAACG
TTCTTATCAAGAAAATACCTTTATAA

Translation (311 aa):
MIKNNQTLFNQFLLLGLPIPAEHQQLFFALFLSMYLTTILGNLIIIILIRLDSHLHTPMYLFLSNLSFSD
LCFSSVTMPKLLQNMQSQDTSITYAGCLTQMYFFVLFGGLEIFLLVVMAYDRYVAICLPLHYTSIMSLKL
CVCLVLLSWVISILNSMLHTLLLARLSFCEDNMIRHFFCDMSALLKLACSDIYINELMIFILGGPLMVIP
FLLIVMSYVQIIFSILKASSTRAIYKVFSTCGSHLTVVSLFYGTIIGLYLCPSANNFTAKEASIAIMYTV
VTPMLNPFIYSLRNRDIKEALINVLIKKIPL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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