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Report for CCDS24897.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24897.1 Public Mus musculus 11 Wrap53 23 108 98 CCDS HistoryNCBI Gene:216853Re-query CCDS DB by CCDS ID:24897.1Re-query CCDS DB by GeneID:216853See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24897.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000048139.11 ENSMUSP00000047825.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000048139.11Link to Ensembl Protein Viewer:ENSMUSP00000047825.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000048139Re-query CCDS DB by Protein ID:ENSMUSP00000047825
Original member Current member NCBI NM_001364769.1 NP_001351698.1 Accepted alive Link to Nucleotide Sequence:NM_001364769.1Link to Protein Sequence:NP_001351698.1Re-query CCDS DB by Nucleotide ID:NM_001364769Re-query CCDS DB by Protein ID:NP_001351698Link to BLAST:NP_001351698.1
Original member Current member NCBI NM_144824.3 NP_659073.1 Accepted alive Link to Nucleotide Sequence:NM_144824.3Link to Protein Sequence:NP_659073.1Re-query CCDS DB by Nucleotide ID:NM_144824Re-query CCDS DB by Protein ID:NP_659073Link to BLAST:NP_659073.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001351698.1 532 Q8VC51 532 100% 0 0
NP_659073.1 532 Q8VC51 532 100% 0 0

Chromosomal Locations for CCDS 24897.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 69561779 69562019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69562122 69562259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69562394 69562497 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69562649 69562857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69563304 69563436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69563547 69563637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69563859 69563947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69577626 69577737 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69578447 69578545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69578670 69579052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1599 nt):
ATGAAGACGTCGGAGGAGCGACTCTTAGCTCCGGATAGCCTCCCTCCTGACCTGGCCCCAGCTCCGGTAC
CCCAAGGTTCCCCAGCGGAGAAAAATACAGACTTTGAACCGGTGCCTCCGCCATGCGGTGGTGATGACCA
ACCCCAGCTAGCCACAGATCCCGTGGCTAGCTTGGTTGTGTCCCAGGAGCTTCAACAAGGGGACTCTGTA
CCTCTGGAAGTAGAATTTAATACTTCCAGTGAGTTGAGTCCTGGAATCGAGGAGCAAGATGTTTCTGAAC
ATGCGAGTCTTCCCGGAGAAGAAACGAATCTCCCCGAGTTGGAGTCAGGAGAAGCCACGGAAGGTGTGTC
TGAGGAACGCGCTGAAGTGGATGAGGGGGACACCTTTTGGACCTACAGCTTCTCGCAGGTACCCCGATAC
CTCAGTGGTTCCTGGTCCGAGTTCAGCACCCGCTCCGAGAACTTCTTGAAAGGTTGCAAGTGGGCCCCTG
ACGGTTCCTGTATCTTGACCAATAGTGCTGATAATGTCCTTCGGATTTACAACCTGCCCCCAGAATTGTA
CAGTGAACAAGAGCAGGTGGATTACGCCGAAATGGTTCCTGTCCTTCGAATGGTGGAGGGCGACACCATC
TATGATTACTGCTGGTATTCTCTGATGTCCTCCACCCAGCCAGACACCTCCTATGTGGCCAGCAGCAGCC
GGGAGAACCCGATTCACATCTGGGATGCATTCACTGGAGAACTACGGGCTTCCTTTCGCGCTTACAACCA
CCTGGATGAGTTGACAGCAGCCCACTCGCTCTGTTTCTCCCCGGATGGTTCCCAACTCTTCTGTGGCTTC
AACCGGACTGTGCGTGTCTTTTCCACATCCAGACCTGGCAGAGACTGTGAGGTGCGAGCCACATTTGCCA
AAAAGCAGGGCCAGAGCGGTATCATCTCCTGTATAGCCTTCAGTCCATCCCAGCCCCTCTATGCCTGTGG
CTCCTACGGCCGCACCATAGGCCTGTATGCCTGGGATGATGGTTCGCCTCTTGCCTTGCTGGGAGGCCAC
CAAGGGGGTATCACCCACCTTTGCTTTCACCCTGATGGCAATCTCTTCTTCTCGGGAGCCCGAAAGGATG
CTGAACTTCTGTGCTGGGATCTCCGGCAGCCAGGCCACCTCCTGTGGTCTCTGAGTCGGGAAGTGACCAC
TAATCAGCGCATCTACTTTGATCTGGACCCGAGCGGTCAGTTCCTAGTGAGCGGCAACACCAGTGGAGTT
GTCTCTGTGTGGGATATCAGTGGAGCTCTTAGTGACGACAGCAAGCTGGAACCCGTGGTGACTTTTCTGC
CTCAGAAGGACTGCACCAACGGAGTCAGCCTTCACCCTACCTTGCCTCTACTGGCCACTGCTTCTGGCCA
GCGCGTGTTCCCTGAGCCCACCAATAGCGGGGATGAAGGTGAGCTGGAGCTGGAGCTTCCTCTGCTCTCC
CTGTGCCACGCCCATCCCGAATGTCAGCTTCAGCTCTGGTGGTGTGGAGGGGGACCTGACCCCAGTAGCC
CTGTTGACGACCAGGATGAAAAGGGACAAAGAAGGACAGAGGCTGTGGGGATGAGTTAA

Translation (532 aa):
MKTSEERLLAPDSLPPDLAPAPVPQGSPAEKNTDFEPVPPPCGGDDQPQLATDPVASLVVSQELQQGDSV
PLEVEFNTSSELSPGIEEQDVSEHASLPGEETNLPELESGEATEGVSEERAEVDEGDTFWTYSFSQVPRY
LSGSWSEFSTRSENFLKGCKWAPDGSCILTNSADNVLRIYNLPPELYSEQEQVDYAEMVPVLRMVEGDTI
YDYCWYSLMSSTQPDTSYVASSSRENPIHIWDAFTGELRASFRAYNHLDELTAAHSLCFSPDGSQLFCGF
NRTVRVFSTSRPGRDCEVRATFAKKQGQSGIISCIAFSPSQPLYACGSYGRTIGLYAWDDGSPLALLGGH
QGGITHLCFHPDGNLFFSGARKDAELLCWDLRQPGHLLWSLSREVTTNQRIYFDLDPSGQFLVSGNTSGV
VSVWDISGALSDDSKLEPVVTFLPQKDCTNGVSLHPTLPLLATASGQRVFPEPTNSGDEGELELELPLLS
LCHAHPECQLQLWWCGGGPDPSSPVDDQDEKGQRRTEAVGMS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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