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Report for CCDS24798.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24798.1 Public Mus musculus 11 Smcr8 23 108 98 CCDS HistoryNCBI Gene:237782Re-query CCDS DB by CCDS ID:24798.1Re-query CCDS DB by GeneID:237782See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24798.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000102667.4 ENSMUSP00000099728.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102667.4Link to Ensembl Protein Viewer:ENSMUSP00000099728.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000102667Re-query CCDS DB by Protein ID:ENSMUSP00000099728
Original member Current member NCBI NM_175491.4 NP_780700.1 Accepted alive Link to Nucleotide Sequence:NM_175491.4Link to Protein Sequence:NP_780700.1Re-query CCDS DB by Nucleotide ID:NM_175491Re-query CCDS DB by Protein ID:NP_780700Link to BLAST:NP_780700.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_780700.1 785 Q3UMB5-2 785 100% 0 0

Chromosomal Locations for CCDS 24798.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 60778028 60780385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2358 nt):
ATGATCAGCGCCCCTGATGTGGTGGCCTTCACCAAGGAAGATGAATACGAGGAAGAACCTTACAATGAGC
CCGCTTTGCCTGAGGAGTACTCAGTCCCTCTCTTTCCTTATGCCAGCCAGGGGGCAAACCCCTGGTCTAA
ACTGTCTGGGGCCAAGTTCTCCAGGGACTTCATCCTCATTTCCGAGTTCTCTGAGCAGGTGGGACCCCAG
CCCTTGCTTACCATCCCCAATGACACCAAAGTTTTTGGCACTTTTGATCTTAATTACTTCTCTTTGCGGA
TTATGTCGGTGGATTACCAGGCTTCATTCGTAGGCCATCCTCCCGGTTCTGCCTACCCCAAGTTGAACTT
TGTGGAAGACTCTAAAGTGGTACTGGGAGACTCTAAGGAAGGGGCCTTTGCATATGTGCACCACCTCACC
TTGTACGACCTGGAGGCCAGGGGCTTTGTGAGGCCCTTTTGTATGGCTTATATCTCCGCAGACCAGCATA
AAATCATGCAGCAGTTCCAAGAGCTCTCGGCCGAATTTTCCAAAGCATCTGAGTGCTTGAAGATGGGCAA
CAGGAAGGCATTCGCTGGGGAACTTGAAAAAAAGCTGAAAGACTTGGATTACACAAGGACAGTGCTACAC
ACAGAAACCGAGATCCAGAAGAAAGCCAACGACAAGGGTTTTTATTCTTCTCAGGCGATTGAGAAAGCCA
ATGAACTGGCCAATGTGGAGAAGTCCATCATCGAACATCAAGATTTGCTGAGGCAGATCCGCTCATACCC
TCGTCAGAAGACGAAGATCCCTGACTTGCAGCCTGGTGATACAGAGCATACCCAGGATCAGGCTGACCAG
GTATCCACTACCTCTAATCCTGAGGAGTCCGCTAATGCAGACCTTTATACCTGCAGACCGGCTTACACCC
CCAAACTCATCAAAGCAAAGTCCACCAAGTGTTTTGACAAGAAGTTGAAGACCTTGGAGGAACTCTGTGA
CACTGAGTATTTCACTCAGACCCTGGCCCAGCTTAGCCACATTGAACACATGTTCAGAGGAGACCTGTGC
TACCTCCTGACCAGTCAGATTGACAGAGTGCTTCGAAAACAACAGCCCATAACGAATTTCCTCTTTGAAG
ATTTTGTAGAGGTGGATGACAGGATGGAAAAGCAAGAGAATGTACCCTCTCAGCCCAGTCAGGACAGGCT
GCCTCCCAAGCCTGTAGAAGAATGCCCCATTCCTAAAGTGTTAATTAGCGTTGGCTCTTACAAGTCCAGT
GTGGAGTCTGTATTGATCAAGATGGAGCAGGAACTTGGCGATGAAGAGTACACGGGGGTGGAGGCAACAG
AGGCACGCAGTTTTGACCCCCAAGAGAACCTGGACTACCTGGATATGGATATGAAAGGGAGCATCAGTAG
TGGGGAAAGCATTGAGGTGCTGGGCACCGAGAAGTCAGCCTCTGTGTTGTCGAAATCTGACAGCCAGGCC
AGCCTCACCGTGCCATTGAGCCCCCATGTAGTCCGTAGCAAAGCGGTCAGCCACAGGACAATCAGCGAGG
ACAGCATTGAAGTCTTAAGTACCTGCCCTTCTGAGGCCCTCATTCCTGATGACTTTAAGGCCAGTTACCC
AAGTGCCATTAATGAAGAAGAAGCCTATGCGGATAATGAGGGGGCCATCCATTTCCAGGCAAGTGCCGGC
TCACCAGAACCGGATGAGACTCAGGAGGGCAACTTGGAAAATATCCCATCCCAAATAGACTCCAGCTGCT
GTATTGGAAAGGAGAGTGAAGGTCACTTGGTGCCTCTCCCAACCCCAGCCTACACTCTTTCTGATGAGGA
CAGTGTGGTGAGCATTCCCCCACAGCGCTACATACAGAAGGACCAGGGGCTCCACGTGGACTTCGGAGTG
GAAAACACTGACCCTTCTCCCCGAGACAACAGTTGTGAAATGTTCCCAGCTTATGAGCTGGATCCAAGCT
GCCTTCTGGCTAGCCGAGATGTTAGTAAGATGAGCCTGGATAACTACTCGGATACCACTAGCTACATGGG
CAGTGCGGCCTCTACCAGCTCAGACAGAATCCCCTCAGCACCTCCTGCTGGCCTATCCTCTGAGAGGCAC
AAAAAGAGAGCTGGCCAGAATGCCTTAAAATTCATCCGCCAGTACCCTTTTGCCCACCCAGCCATCTACT
CCCTGCTCAGTGGGAGGACACTTGTGGTCCTGGGCGAAGATGAAACCATTGTCAGGAAGCTGGTGACTGC
ACTGTCCATCTTTGTTCCCAACTATGGCTGCTATGCCAAGCCGGTGAAGCACTGGATTTCTTCCCCTTTG
CATATTATGGATTTCCAGAAGTGGAAGCTTATTGGCCTACAAAGGTAA

Translation (785 aa):
MISAPDVVAFTKEDEYEEEPYNEPALPEEYSVPLFPYASQGANPWSKLSGAKFSRDFILISEFSEQVGPQ
PLLTIPNDTKVFGTFDLNYFSLRIMSVDYQASFVGHPPGSAYPKLNFVEDSKVVLGDSKEGAFAYVHHLT
LYDLEARGFVRPFCMAYISADQHKIMQQFQELSAEFSKASECLKMGNRKAFAGELEKKLKDLDYTRTVLH
TETEIQKKANDKGFYSSQAIEKANELANVEKSIIEHQDLLRQIRSYPRQKTKIPDLQPGDTEHTQDQADQ
VSTTSNPEESANADLYTCRPAYTPKLIKAKSTKCFDKKLKTLEELCDTEYFTQTLAQLSHIEHMFRGDLC
YLLTSQIDRVLRKQQPITNFLFEDFVEVDDRMEKQENVPSQPSQDRLPPKPVEECPIPKVLISVGSYKSS
VESVLIKMEQELGDEEYTGVEATEARSFDPQENLDYLDMDMKGSISSGESIEVLGTEKSASVLSKSDSQA
SLTVPLSPHVVRSKAVSHRTISEDSIEVLSTCPSEALIPDDFKASYPSAINEEEAYADNEGAIHFQASAG
SPEPDETQEGNLENIPSQIDSSCCIGKESEGHLVPLPTPAYTLSDEDSVVSIPPQRYIQKDQGLHVDFGV
ENTDPSPRDNSCEMFPAYELDPSCLLASRDVSKMSLDNYSDTTSYMGSAASTSSDRIPSAPPAGLSSERH
KKRAGQNALKFIRQYPFAHPAIYSLLSGRTLVVLGEDETIVRKLVTALSIFVPNYGCYAKPVKHWISSPL
HIMDFQKWKLIGLQR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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