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Report for CCDS24749.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24749.1 Public Mus musculus 11 Or5af1 23 108 98 CCDS HistoryNCBI Gene:258065Re-query CCDS DB by CCDS ID:24749.1Re-query CCDS DB by GeneID:258065See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24749.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000078217.1 ENSMUSP00000077344.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000078217.1Link to Ensembl Protein Viewer:ENSMUSP00000077344.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000078217Re-query CCDS DB by Protein ID:ENSMUSP00000077344
Original member Current member EBI ENSMUST00000216407.1 ENSMUSP00000149697.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000216407.1Link to Ensembl Protein Viewer:ENSMUSP00000149697.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000216407Re-query CCDS DB by Protein ID:ENSMUSP00000149697
Original member Current member NCBI NM_001011819.2 NP_001011819.1 Accepted alive Link to Nucleotide Sequence:NM_001011819.2Link to Protein Sequence:NP_001011819.1Re-query CCDS DB by Nucleotide ID:NM_001011819Re-query CCDS DB by Protein ID:NP_001011819Link to BLAST:NP_001011819.1

Chromosomal Locations for CCDS 24749.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 58831156 58832082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (927 nt):
ATGTCCAATCACACAAGAGTGACTCACTTCATCCTCAGGGGCTTCTCAGATGTCCCACAGCTGAGATTGG
TGCTCATCCCATTTTTCTTGTTCTTTTACACTTTCGGCATCCTGGGGAACTTCTCCATCATCACGGCTGT
GACAAGAGACAGTCGACTCCACTCTCCCATGTACTTCTTCCTGAAGAATCTGTCTTTCCTGGACATTTGC
TACACCTCAGCCACCATCCCCAAGGCAGTGGTGATATCCCTCACAGGCTCAGGGGTCATCTCCTATCAAG
AGTGTGCAGCACAGCTCTACATAATTTTTACATTTGCATGTACAGAATGCTTTCTACTCACGGCCATGGC
TTATGACCGGTGCCTAGCCATCCTCAGACCACTGATCTATGGAACCATCATGAGCCAGAAATATTGTTCT
GCATTGGTGGTCACTGCCTGGGTGGGTGGAGCTATCTACTCAGCCTTCCACACATTCAACACCTTCTCCC
TCCCCTACTGTGGACCCAATGTTATTGATCACTTCTTCTGTGACATGCCACCAGTCATGAGACTGTCCTG
CACTGACTACCATCTCACTGAGGAGGTGGGCTTTGCTGTCAGTAGTTGCATTGTCATGAGCTCATTCGTC
CTCACAGTGGTCTCCTATATTGGCATTGTGGCCACAGTTCTTCGCATCCCCTCAGTAGAAGGCAGGTGGA
AAGCCTTTTCTACCTGCTCCTCTCACCTGACCACAGTCATCTTGTTTTATGGAACTGGAAGCTTTGTGTA
TCTGAGGCCCGCCTCTCAGTACTCCCCGACCCTGGGTCGCCTGGCATCTATTTTCTACTCTGTAGTCACA
CCATCTCTGAATCCAGTTGTCTATTGTCTGAGGAACAAAGATATGAAGTTTGCTCTACAGAAACTTTATT
GTGGGAGAAAGTATTGA

Translation (308 aa):
MSNHTRVTHFILRGFSDVPQLRLVLIPFFLFFYTFGILGNFSIITAVTRDSRLHSPMYFFLKNLSFLDIC
YTSATIPKAVVISLTGSGVISYQECAAQLYIIFTFACTECFLLTAMAYDRCLAILRPLIYGTIMSQKYCS
ALVVTAWVGGAIYSAFHTFNTFSLPYCGPNVIDHFFCDMPPVMRLSCTDYHLTEEVGFAVSSCIVMSSFV
LTVVSYIGIVATVLRIPSVEGRWKAFSTCSSHLTTVILFYGTGSFVYLRPASQYSPTLGRLASIFYSVVT
PSLNPVVYCLRNKDMKFALQKLYCGRKY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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