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Report for CCDS24672.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24672.1 Public Mus musculus 11 9530068E07Rik 23 108 98 CCDS HistoryNCBI Gene:213673Re-query CCDS DB by CCDS ID:24672.1Re-query CCDS DB by GeneID:213673See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 24672.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000036952.4 ENSMUSP00000048441.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000036952.4Link to Ensembl Protein Viewer:ENSMUSP00000048441.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000036952Re-query CCDS DB by Protein ID:ENSMUSP00000048441
Original member Current member NCBI NM_153117.2 NP_694757.1 Accepted alive Link to Nucleotide Sequence:NM_153117.2Link to Protein Sequence:NP_694757.1Re-query CCDS DB by Nucleotide ID:NM_153117Re-query CCDS DB by Protein ID:NP_694757Link to BLAST:NP_694757.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_694757.1 259 Q8K201 259 100% 0 0

Chromosomal Locations for CCDS 24672.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 52396468 52396603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 52403046 52403557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 52406945 52407076 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (780 nt):
ATGGCCGCCTCCGCCCTGGGCAGAATGTGCGGGGCTGCACGAGAGAAGCTGTCTCCCGGGCCGGGCGCCC
GGGGCCTCGGGGCTCTGGCGCGATCTCTGGTGCTGGCGTTGCTGCTCGTGCCCGTCCTGTGCTCTGATAG
ATCAGAGAATCCTCCAAACAATGCTACCGTTTCTTCTCCAGTTGTGGTGACTGCGCCTGGAAACCACACC
AGCCCTTCTGTTTCCCAGATCAGCACCACACTTAGCCCAGCCAGTGCAGAGAAAAGTGGGAGCAGCTCTG
CGGCGCCCACCCCCACTGCTGCTCCGTCTGCGCCCGAGGAGGAGGCTGACAGCAATGAGGACCCCAGCAT
GGAGGAGGAGGACCTCCTGGCTCTCAACAGCTCCCCGGCCACAGGCAAGGACACCCTGGACAATGGCGAC
TACGGAGAGCCGGACTACGACTGGACCACCAACCCTAGAGATGAGGAGCCTGAAGACATCAACATTGCCA
TCAGCAAGGAGAGCAGGCGCTTCAGGGGCTTCCAGGACTCAGTGGAGGTCGTGAAGCTCCCGCCCCCCAA
CAGGGAGGATAGCCATTTCTTTTTTCATCTCCTTATTTTTGCTTTCTGTGCAGCTGTTGTGTATGTTACC
TATCACAACAAAAGGAAGATTTTCCTCCTAGTTCAAAGCAGAAAGTGGCGTGATGGCTTGTGTTCCAAAA
CTGTGGAGTACCATCGTTTGGACCAGAACGTGAACGAGGCCATGCCTTCTCTGAAGATCACCAATGATTA
CATTTTCTAA

Translation (259 aa):
MAASALGRMCGAAREKLSPGPGARGLGALARSLVLALLLVPVLCSDRSENPPNNATVSSPVVVTAPGNHT
SPSVSQISTTLSPASAEKSGSSSAAPTPTAAPSAPEEEADSNEDPSMEEEDLLALNSSPATGKDTLDNGD
YGEPDYDWTTNPRDEEPEDINIAISKESRRFRGFQDSVEVVKLPPPNREDSHFFFHLLIFAFCAAVVYVT
YHNKRKIFLLVQSRKWRDGLCSKTVEYHRLDQNVNEAMPSLKITNDYIF


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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