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Report for CCDS24668.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24668.1 Public Mus musculus 11 Or2y6 23 108 98 CCDS HistoryNCBI Gene:276865Re-query CCDS DB by CCDS ID:24668.1Re-query CCDS DB by GeneID:276865See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 24668.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000075844.3 ENSMUSP00000075241.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000075844.3Link to Ensembl Protein Viewer:ENSMUSP00000075241.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000075844Re-query CCDS DB by Protein ID:ENSMUSP00000075241
Original member Current member NCBI NM_207253.1 NP_997136.1 Accepted alive Link to Nucleotide Sequence:NM_207253.1Link to Protein Sequence:NP_997136.1Re-query CCDS DB by Nucleotide ID:NM_207253Re-query CCDS DB by Protein ID:NP_997136Link to BLAST:NP_997136.1

Chromosomal Locations for CCDS 24668.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 52213052 52213987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (936 nt):
ATGGAAAATTTGAACACCAGTTCAGAAGAGGGCTTCATTTTGGTGGTCTTCTCAGACTGGCCTCACCTAG
AACCCATCCTTTTTGCTTTCATTTCTATTTTCTACTCTCTGACTCTCTTTGGCAACACCGTGATCATCAT
TCTGTCTCAACTGGACCTCTGCCTGCACACACCCATGTACTACTTTCTCTGCCACCTCTCCTTCCTGGAC
CTCTGCTACACTGCCAGCACTGTGCCCCAGCTTCTGGTCAACCTCTCTGGACTTGACAGGACCATCAGCT
TTGGAAGGTGTGTGGCCCAGCTCTGCATAGTGCTCTCACTGGGAGGAACTGAGTGTGTGCTTTTGGTGGC
AATGGCTATAGATCGCTATGCTGCTGTGTGTCGCCCACTCCACTACACAACCATTATGCACCCTGTTCTC
TGCAGAGCATTGGTTGTATTCTCCTGGGTAGGGGGCCTTGTGAACTCTCTGATCCAGACAAGCCTTGTGA
TGGCCATGCCTCTGTGTGGACACCAACTGAATCACTTCTTCTGTGAGCTACCTGTTCTCCTGAAGATGGC
CTGTGAGGACACAGGAGGCACAGAGGTCAATTTGTTTGTGGCCCGGGTCATAATCTTAGTGTGTCCTTTA
CTGCTAATTCTAGGCTCCTATGCTCACATTGCCAGGGCAGTGCTGAACATCAGGTCAATGGCTGGTCGCA
GAAAGGCTTTTGGGACGTGTGCATCTCATCTCATTGTGGTTGCCATGTTTTATGGCTCAGGTATCTCCAC
ATACCTCCAACCTGTCCACAGGTATTCTGAGAAGGAGGGGAAATTTCTTGCCCTTTTTTATACTATCATC
ACCCCCATGCTCAACCCTCTGATCTATACGCTGAGGAACAAGGATGTGAAAGGAGCGCTGTGGAAGGTGC
TAGGCAGGAGCACAGACTCAGCATAG

Translation (311 aa):
MENLNTSSEEGFILVVFSDWPHLEPILFAFISIFYSLTLFGNTVIIILSQLDLCLHTPMYYFLCHLSFLD
LCYTASTVPQLLVNLSGLDRTISFGRCVAQLCIVLSLGGTECVLLVAMAIDRYAAVCRPLHYTTIMHPVL
CRALVVFSWVGGLVNSLIQTSLVMAMPLCGHQLNHFFCELPVLLKMACEDTGGTEVNLFVARVIILVCPL
LLILGSYAHIARAVLNIRSMAGRRKAFGTCASHLIVVAMFYGSGISTYLQPVHRYSEKEGKFLALFYTII
TPMLNPLIYTLRNKDVKGALWKVLGRSTDSA


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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