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Report for CCDS24583.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24583.1 Public Mus musculus 11 Havcr1 23 108 98 CCDS HistoryNCBI Gene:171283Re-query CCDS DB by CCDS ID:24583.1Re-query CCDS DB by GeneID:171283See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24583.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000047568.4 ENSMUSP00000043827.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000047568.4Link to Ensembl Protein Viewer:ENSMUSP00000043827.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000047568Re-query CCDS DB by Protein ID:ENSMUSP00000043827
Original member Current member NCBI NM_134248.2 NP_599009.2 Accepted alive Link to Nucleotide Sequence:NM_134248.2Link to Protein Sequence:NP_599009.2Re-query CCDS DB by Nucleotide ID:NM_134248Re-query CCDS DB by Protein ID:NP_599009Link to BLAST:NP_599009.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_599009.2 305 Q5QNS5-1 305 99.3443% 0 2

Chromosomal Locations for CCDS 24583.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 46751177 46751225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46752304 46752642 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46756129 46756287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46766641 46766709 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46770491 46770540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46773634 46773745 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46775490 46775526 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46778511 46778613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (918 nt):
ATGAATCAGATTCAAGTCTTCATTTCAGGCCTCATACTGCTTCTCCCAGGCGCTGTGGATTCTTATGTGG
AAGTAAAGGGGGTGGTGGGTCACCCTGTCACACTTCCATGTACTTACTCAACATATCGTGGAATCACAAC
GACATGTTGGGGCCGAGGGCAATGCCCATCTTCTGCTTGTCAAAATACACTTATTTGGACCAATGGACAT
CGTGTCACCTATCAGAAGAGCAGTCGGTACAACTTAAAGGGGCATATTTCAGAAGGAGATGTGTCCTTGA
CGATAGAGAACTCTGTTGAGAGTGACAGTGGTCTGTATTGTTGTCGAGTGGAGATTCCTGGATGGTTTAA
TGATCAGAAAGTGACCTTTTCATTGCAAGTTAAACCAGAGATTCCCACACGTCCTCCAAGAAGACCCACA
ACTACAAGGCCCACAGCTACAGGAAGACCCACGACTATTTCAACAAGATCCACACATGTACCAACATCAA
CCAGAGTCTCTACCTCCACTCCTCCAACATCTACACACACATGGACTCACAAACCAGAACCCACTACATT
TTGTCCCCATGAGACAACAGCTGAGGTGACAGGAATCCCATCCCATACTCCTACAGACTGGAATGGCACT
GTGACATCCTCAGGAGATACCTGGAGTAATCACACTGAAGCAATCCCTCCAGGGAAGCCGCAGAAAAACC
CTACTAAGGGCTTCTATGTTGGCATCTGCATCGCAGCCCTGCTGCTACTGCTCCTTGTGAGCACCGTGGC
TATCACCAGGTACATACTTATGAAAAGGAAGTCAGCATCTCTAAGCGTGGTTGCCTTCCGTGTCTCTAAG
ATTGAAGCTTTGCAGAACGCAGCGGTTGTGCATTCCCGAGCTGAAGACAACATCTACATTGTTGAAGATA
GACCTTGA

Translation (305 aa):
MNQIQVFISGLILLLPGAVDSYVEVKGVVGHPVTLPCTYSTYRGITTTCWGRGQCPSSACQNTLIWTNGH
RVTYQKSSRYNLKGHISEGDVSLTIENSVESDSGLYCCRVEIPGWFNDQKVTFSLQVKPEIPTRPPRRPT
TTRPTATGRPTTISTRSTHVPTSTRVSTSTPPTSTHTWTHKPEPTTFCPHETTAEVTGIPSHTPTDWNGT
VTSSGDTWSNHTEAIPPGKPQKNPTKGFYVGICIAALLLLLLVSTVAITRYILMKRKSASLSVVAFRVSK
IEALQNAAVVHSRAEDNIYIVEDRP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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