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Report for CCDS24511.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24511.1 Public Mus musculus 11 Asb3 23 108 98 CCDS HistoryNCBI Gene:65257Re-query CCDS DB by CCDS ID:24511.1Re-query CCDS DB by GeneID:65257See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24511.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000020551.12 ENSMUSP00000020551.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000020551.12Link to Ensembl Protein Viewer:ENSMUSP00000020551.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000020551Re-query CCDS DB by Protein ID:ENSMUSP00000020551
Original member Current member NCBI NM_023906.3 NP_076395.2 Accepted alive Link to Nucleotide Sequence:NM_023906.3Link to Protein Sequence:NP_076395.2Re-query CCDS DB by Nucleotide ID:NM_023906Re-query CCDS DB by Protein ID:NP_076395Link to BLAST:NP_076395.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_076395.2 525 Q9WV72 525 100% 0 0

Chromosomal Locations for CCDS 24511.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 30998326 30998521 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 31028908 31029066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 31055458 31055570 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 31056102 31056237 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 31058822 31058999 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 31061389 31061586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 31081362 31081622 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 31085001 31085131 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 31101037 31101242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1578 nt):
ATGGATTTTACAGAGGCTTACTCAGACACGTGTTCTACGGTTGGACTTGCTGCCAGAGAAGGCAATGTTA
AAATTCTAAGGAAATTGCTCAAAAAAGGCCGAAGTGTGGATGTCGCTGATAACAGGGGATGGATGCCGAT
TCATGAAGCAGCTTATCACAATGCTGTAGAGTGTTTGCAGATGCTAATTCATACAGATTCATCTGAAAAC
TACATTAAGGCAAAGACGTTTGAGGGCTTCTGTGCATTGCATCTTGCTGTGAGTCAAGGACATTGGAAAA
TCACACAGATTCTTTTGGAAGCTGGAGCTGATCCTAATGAAACCACTTTAGAAGAAACTACACCATTGTT
TTTAGCTGTTGAAAGTGGACGGATAGATGTATTAAAGCTGTTGCTTCAACATGGAGCAAATGTCAATGGA
TCCCATTCTATGAGTGGATGGAATTCCTTGCACCAGGCTTCTTTCCAGGGAAATGCTGAGACTATAAGAT
TGCTTCTTAAACAAGGAGCAGACAGAGAATGCCAAGATGACTTTGGAATCACACCTCTGTTTGTGGCTGC
TCAGTATGGGAAGCTAGAGAGCATGAGCATACTTATTTCATCTGGTGCAAATGTCAATTGCCAAGCCTTG
GATAAAGCTACTCCTTTGTTTATTGCTGCACAAGAGGGTCATACAAAATGTGTGGAACTTTTGCTGTCCA
GTGGGGCGGATCCTGACCTTTATTGTAATGAAGACAATTGGCAATTACCTATTCATGCTGCTGCACAAAT
GGGCCATACAGAGACCTTGGACTTGTTAATACCACGTACTAACCGGGCTTGTGACACTGGACCAGACAAA
GTGAGCCCTGTTTATTCTGCAGTGTTTGGAGGACGGGAAGAGTGCCTGGAAATGTTACTGCAGAATGGCT
ATAGCCCAGATGCACAAATGTGCTTGGTATTTGGATTCAGTTCCCCTCTGTGCATGGCTTTCCAAAAGGA
CTGTGATTTTTCTGGAATTGTGAATATTCTTTTGAAGTATGGAGCCCAGTTAAATGAACTTCACTTGGCA
TACTGCCTCAAGTATGAGAAGTTTTCAATGTTTTGCTCTTTTTTGAAGAAAGGTTCCCTGATGGTACCTT
GGAATCATACATCTGAATTCATAAGTTATGCAGTTAAAGCACAAACAAAATACAAGGCATGGTTGCCACA
TCTCCTGCTTGCTGGATTTGACCCATTGATTCTGCTGTGCAGCAGCTCTTGGGTTGATTCAGCCAGTGAT
GACATCCTTATCTTTACTTTGGAATTTTCTAATTGGAAGAGACTTCCTTCAGCTGTTGAAAAGATGCTCT
CTGTTCGTGCAAACTCCTCTTGGGCTCTTCAACAACATTTGGCCTCTGTTCCAAGCCTAACCCATCTTTG
TCGTTTGGAAATTCGGGCCAGTCTAAAAGCAGAGCACCTTCACTCTGACATTTTCATCCATCAGTTGCCA
CTTCCCAGAAGTCTGCAGAACTATTTGCTCTATGAAGAGGTTTTAAGAATGAATGAGATTCTAGAACCAG
CAGCTAATCAGGATGGAGAAACCAGCAAGGCCACCTGA

Translation (525 aa):
MDFTEAYSDTCSTVGLAAREGNVKILRKLLKKGRSVDVADNRGWMPIHEAAYHNAVECLQMLIHTDSSEN
YIKAKTFEGFCALHLAVSQGHWKITQILLEAGADPNETTLEETTPLFLAVESGRIDVLKLLLQHGANVNG
SHSMSGWNSLHQASFQGNAETIRLLLKQGADRECQDDFGITPLFVAAQYGKLESMSILISSGANVNCQAL
DKATPLFIAAQEGHTKCVELLLSSGADPDLYCNEDNWQLPIHAAAQMGHTETLDLLIPRTNRACDTGPDK
VSPVYSAVFGGREECLEMLLQNGYSPDAQMCLVFGFSSPLCMAFQKDCDFSGIVNILLKYGAQLNELHLA
YCLKYEKFSMFCSFLKKGSLMVPWNHTSEFISYAVKAQTKYKAWLPHLLLAGFDPLILLCSSSWVDSASD
DILIFTLEFSNWKRLPSAVEKMLSVRANSSWALQQHLASVPSLTHLCRLEIRASLKAEHLHSDIFIHQLP
LPRSLQNYLLYEEVLRMNEILEPAANQDGETSKAT


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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