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Report for CCDS24509.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24509.1 Public Mus musculus 11 Erlec1 23 108 98 CCDS HistoryNCBI Gene:66753Re-query CCDS DB by CCDS ID:24509.1Re-query CCDS DB by GeneID:66753See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24509.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000073192.13 ENSMUSP00000072929.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000073192.13Link to Ensembl Protein Viewer:ENSMUSP00000072929.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000073192Re-query CCDS DB by Protein ID:ENSMUSP00000072929
Original member Current member NCBI NM_025745.3 NP_080021.3 Accepted alive Link to Nucleotide Sequence:NM_025745.3Link to Protein Sequence:NP_080021.3Re-query CCDS DB by Nucleotide ID:NM_025745Re-query CCDS DB by Protein ID:NP_080021Link to BLAST:NP_080021.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080021.3 483 Q8VEH8 483 100% 0 0

Chromosomal Locations for CCDS 24509.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 30931777 30931848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 30934672 30934747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 30934982 30935059 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 30939497 30939621 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 30943039 30943098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 30943699 30943860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 30948079 30948208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 30948300 30948523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 30949943 30949977 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 30950560 30950623 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 30950741 30950818 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 30951307 30951387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 30952572 30952676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 30953914 30954075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1452 nt):
ATGGAGGAAGGAGACGGCGGCTTGCGGAGCCTGGTCCCCGGAGGGCCACTGTTGCTGGTTCTGTACGGTC
TCCTGGAGGCGTCCGGCGGCGGCCGAGCGCTGCCCCAGCTCAGCGACGACATCCCCTTCCGAGTCAACTG
GCCTGGTACCGAGTTCTCTCTGCCTACAACTGGAGTTTTGTATAAAGAAGATAATTACATCATCATGACA
ACTGCTCATAAAGAAAAATACAAATGTATACTTCCACTTGTGACAAGTGGGGATGAGGAAGAAGAAAAGG
ATTACAAAGGCCCCAATCCAAGAGAGCTTTTGGAACCACTATTTAAACAAAGCAGTTGTTCCTACAGAAT
TGAATCTTACTGGACTTATGAGGTCTGTCATGGGAAACATATTCGACAGTACCATGAAGAAAAAGAAACT
GGCCAAAAAGTAAATATTCATGAATACTACCTTGGGAATATGTTGGCTAAGAATCTTCTGTATGAAAAAG
AACGAGAAGCAAAAGAAAATGAAAAGTCAAATGAGATTCCCACTAAAAACATTGAAGGTCAGATGACACC
CTACTATCCTGTTGGAATGGGAAATGGTACACCTTGTAGTCTGAAACAAAATCGACCCAGATCAAGTACT
GTGATGTACATATGCCATCCTGAATCTAAGCATGAGATCCTTTCAGTAGCTGAAGTTACAACTTGTGAAT
ATGAAGTTGTCATTTTGACACCACTCTTGTGCAGTCATCCTAAATACAAGTTCAGAGCCTCTCCTGTGAA
TGACATATTCTGTCAATCACTGCCGGGCTCTCCATTTAAACCCCTCACACTAAGACAGTTGGAGCAGCAG
GAAGAGATACTGAGAGTGCCATTCAGGAGAAATAAAGAGGAAGATTTGCCATCTGCTAAGGAAGAGAGAT
TTCCAGCCATCCACAAACCTATTGCTGTTGGCTCTCAGCCAGTGCTCACTGTTGGAACAACCCACATTTC
CAAGCTGACAGATGACCAGCTCATCAAGGAGTTCCTAAGTGGCTCTTACTGCTTTCATGGGGGTGTTGGT
TGGTGGAAATATGAATTCTGCTATGGCAAACATGTACATCAATATCACGAGGACAAAGATAATGGAAAAA
CTTCTGTAGTTGTGGGGACATGGAACCAAGAAGAGCATGTTGAGTGGGCTAAGAAAAATACTGCTAGAGC
GTATCATCTTCAAGACGATGGCACCCAGACAGTCAGGATGGTGTCACATTTTTATGGAAATGGGGATATT
TGTGATATAACTGACAAACCCAGACAAGTGACTGTAAAACTAAAGTGTAAAGAATCAGACTCTCCTCATG
CTGTCACTGTGTATATGCTAGAGCCTCACTCGTGCCAGTATATTCTTGGGGTTGAATCTCCAGTAATCTG
TAAAATTCTAGATACAGCTGATGAAAATGGACTTCTTTCTCTCCCCAATTAA

Translation (483 aa):
MEEGDGGLRSLVPGGPLLLVLYGLLEASGGGRALPQLSDDIPFRVNWPGTEFSLPTTGVLYKEDNYIIMT
TAHKEKYKCILPLVTSGDEEEEKDYKGPNPRELLEPLFKQSSCSYRIESYWTYEVCHGKHIRQYHEEKET
GQKVNIHEYYLGNMLAKNLLYEKEREAKENEKSNEIPTKNIEGQMTPYYPVGMGNGTPCSLKQNRPRSST
VMYICHPESKHEILSVAEVTTCEYEVVILTPLLCSHPKYKFRASPVNDIFCQSLPGSPFKPLTLRQLEQQ
EEILRVPFRRNKEEDLPSAKEERFPAIHKPIAVGSQPVLTVGTTHISKLTDDQLIKEFLSGSYCFHGGVG
WWKYEFCYGKHVHQYHEDKDNGKTSVVVGTWNQEEHVEWAKKNTARAYHLQDDGTQTVRMVSHFYGNGDI
CDITDKPRQVTVKLKCKESDSPHAVTVYMLEPHSCQYILGVESPVICKILDTADENGLLSLPN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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