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Report for CCDS24494.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24494.1 Public Mus musculus 11 Ccdc88a 23 108 98 CCDS HistoryNCBI Gene:108686Re-query CCDS DB by CCDS ID:24494.1Re-query CCDS DB by GeneID:108686See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24494.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000040182.12 ENSMUSP00000048978.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000040182.12Link to Ensembl Protein Viewer:ENSMUSP00000048978.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000040182Re-query CCDS DB by Protein ID:ENSMUSP00000048978
Original member Current member NCBI NM_176841.5 NP_789811.2 Accepted alive Link to Nucleotide Sequence:NM_176841.5Link to Protein Sequence:NP_789811.2Re-query CCDS DB by Nucleotide ID:NM_176841Re-query CCDS DB by Protein ID:NP_789811Link to BLAST:NP_789811.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_789811.2 1845 Q5SNZ0-2 1845 100% 0 0

Chromosomal Locations for CCDS 24494.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 29374348 29374410 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 29374507 29374607 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 29400184 29400292 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 29422540 29422609 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 29424772 29424830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 29429333 29429416 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 29430112 29430252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 29447896 29448068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 29451022 29451103 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 29453119 29453277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 29455370 29455516 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 29456458 29456602 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 29460849 29461033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 29461711 29461848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 29463120 29464190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 29465611 29465738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 29470315 29470456 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 29477294 29477458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 29480490 29480651 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 29482109 29482386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 29482598 29482741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 29485825 29486011 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 29489582 29489727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 29493700 29493792 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 29493879 29494093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 29498409 29498612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 29499335 29499406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 29500976 29501056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 29503383 29503651 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 29503852 29504311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 29507125 29507189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (5538 nt):
ATGGAGAACGAAATCTTCACTCCCCTTCTGGAGCAGTTCATGACCAGCCCCTTGGTCACTTGGGTTAAAA
CGTTTGGACCTCTGGCTGCAGGAAATGGGACTAACCTGGATGAGTATGTGGCTTTAGTGGATGGGGTATT
CTTGAACCAGGTCATGCTCCAAATTAATCCTAAGTCGGAGAGTCAACGAGTAAATAAAAAAGTCAACAAT
GATGCTTCCCTTAGAATTCACAATCTGTCCATTTTGGTGAAACAGATAAAATTTTATTATCAGGAGACTT
TGCAGCAGTTGATTATGATGCCATTGCCAGATATCTTAATCATTGGCAAAAATCCCTTTTCTGAACAAGG
TACAGAAGAAGTTAAAAAGTTGCTTTTGCTCTTACTTGGTTGTGCAGTTCAGTGTCAGAAAAAGGAAGAA
TTTATTGAAAAAATTCAAGGTTTAGATTTTGATACGAAAGCAGCAGTTGCTGCACACATTCAAGAGGTAA
CTCATAATCAAGAAAATGTATTTGATCTGCAATGGATGGAAGTGACAGATATGTCTCAGGAAGACATAGA
ACCACTCTTAAAGAATATGGTGTCACATCTAAGAAGACTGATAGATGAGAGAGATGAACATTCAGAGACT
ATTGTAGAACTCTCAGAAGAGCGAGATGGTGTTCATTTCCTACCCCATGCCTCTTCATCTGCACAGTCAC
CCTGTGGTTCTCCAGGCATGAAGCGAACAGAAAGTCGACAGCATCTCTCAGTGGAATTGGCTGATGCTAA
AGCCAAGATCCGAAGACTTAGGCAGGAATTGGAAGAAAAGACTGAGCAGTTACTGGACTGTAAACAAGAA
CTTGAGCAAATAGAAGTGGAATTGAAGAGGCTGCAACAAGAGAACATGAATTTGCTTTCGGATGCTCGAT
CTGCTAGAATGTACCGAGATGAATTGGATGCCCTCCGAGAGAAAGCAGTCAGAGTTGATAAGCTTGAAAG
TGAACTCAGTAGATATAAAGAGAGACTACATGATATTGAATTTTATAAGGCAAGAGTTGAGGAATTAAAA
GAAGATAATCAAGTTTTATTAGAAACAAAAACTATGCTGGAAGACCAACTAGAAGGAACTCGGGCTCGTT
CTGACAAACTACATGAATTAGAAAAAGAGAATTTACAACTAAAGGCTAAATTGCATGATATGGAGATGGA
ACGAGATATGGATAGAAAGAAGATTGAAGAATTAATGGAAGAAAATATGACTCTGGAAATGGCACAGAAA
CAAAGTATGGATGAGTCATTACACCTTGGCTGGGAGCTGGAACAGATATCCAGAACTAGTGAACTTGCTG
AAGCACCACAGAAGTCCTTGGGCCATGAGGTAAATGAATTAACATCAAGTAAGTTATTAAAGTTGGAAAT
GGAAAACCAGAGTCTGACGAAAACCGTAGAAGAGCTCCGGAGCACTGCGGACTCCGCAGCAGGCAGCACT
TCCAAAATCCTAAAAGTTGAAAAGGAAAACCAGAGACTGAATAAAAAGGTTGAAATTCTTGAAAATGAAA
TTATTCAAGAAAAGCAAAGTCTTCAGAATTGTCAAAATTTAAGCAAGGATCTAATGAAAGAGAAAGCTCA
GCTTGAAAAAACAATAGAGACGCTCAGAGAGAATTCAGAGAGGCAGATTAAAATATTGGAGCAGGAAAAT
GAACATCTGAATCAAACAGTGTCTTCCTTACGGCAGCGCTCCCAGATTAGTGCTGAGGCGAGAGTGAAAG
ACATTGAAAAAGAAAATAAAATTCTCCATGAATCTATCAAAGAAACATGTGGAAAACTAAGCAAGATTGA
ATTTGAAAAAAGACAAATGAAAAAGGAATTAGAGCTTTATAAAGAGAAAGGAGAGCGAGCAGAAGAACTT
GAAAACGAGTTGAATCATCTTGGAAAGGAGAATGAATTGTTGCAGAAAAAGATAACGAATTTAAAGATTA
CGTGTGAAAAACTTGAGACATTAGAACAGGAAAATTCAGAGCTAGAAAGAGAAAATAGGAAATTTAAAAA
AACTTTGGACAGCTTTAAAAACCTTACTTTTCAGTTAGAATCTCTAGAAAAAGAGAATTCCCAACTCGAT
GAAGAAAACTTAGAACTGCGAAGGAGCGTGGAGTCTCTGAAGTGTGCGAGCATGAGAATGGCCCAGCTCC
AGCTAGAGAACAAGGAGCTGGAGAGTGAGAAGGAGCAGCTGAGGAAGGGCTTGGAGCTCATGAGAGCCTC
TTTCAAGAAGACAGAACGCTTGGAAGTTAGCTACCAGGGGCTAGACACAGAAAATCAAAGACTACAAAAA
GCTCTAGAAAATAGCAATAAAAAAATCCAACAGTTAGAGAGTGAGCTACAAGACTTAGAGATGGAAAATC
AAACATTACAAAAAAGCCTAGAGGAACTGAAAATATCTAGCAAAAGACTGGAACAACTAGAAAAAGAAAA
CAAGTCATTAGAGCAAGAGACATCTCAACTTGAAAAGGACAAAAAACAATTGGAGAAGGAAAATAAACGA
CTCCGACAACAAGCAGAAATAAAAGATACCACATTAGAAGAAAATAATGTGAAAATTGGGAATTTGGAAA
AAGAAAACAAAACTTTATTCAAAGAAATTAATGTATATAAAGAGTCCTGTGTTCGTCTAAAAGAATTAGA
AAAAGAAAATAAAGAGCTTGTAAAAAGAGCAACTATTGATATTAAAACCTTGGTTACATTACGTGAGGAT
TTAGTCAGTGAGAAATTGAAGACACAACAAATGAACAATGATCTTGAGAAATTAACTCATGAGCTTGAGA
AGATAGGTTTAAATAAAGAGCGGCTCCTACACGATGAGCAGAGCACTGATGACAGTAGGTACAAACTTTT
GGAATCAAAATTAGAATCCACTCTTAAGAAGTCCCTTGAAATAAAAGAAGAAAAAATTGCTGCTTTAGAA
GCTCGGTTAGAAGAATCTACAAATTACAATCAGCAATTGCGCCACGAACTTAAAACAGTGAAAAAAAATT
ATGAAGCTCTCAAACAGAGACAAGATGAAGAAAGGATGGTACAGAGTTCCATTCCAGTCTCTGGAGAAGA
TGACAAGTGGGGCCGAGAAAGTCAAGAAGCGACTAGAGAGCTCCTGAAAGTTAAAGACAGGTTAATTGAA
GTAGAAAGAAACAATGCTACGCTGCAAGCAGAGAAGCAAGCACTGAAAACTCAACTGAAGCAACTTGAAA
CACAAAATAATAATTTGCAGGCTCAGATTCTTGCACTGCAGAGGCAGACCGTGTCATTGCAGGAGCAGAA
TACCACGCTTCAGACACAGAATGCCAAGCTTCAGGTTGAAAATTCTACCCTTAATTCACAAAGTACTTCA
CTTATGAACCAGAATGCACAGCTTCTAATCCAGCAGTCTTCCTTAGAAAATGAAAATGAATCTATAATGA
AAGAACGAGAAGACTTGAAATCTCTGTATGATGCTCTGATAAAAGATCACGAAAAGCTGGAACTTCTTCA
TGAGCGGCAAGCTTCAGAGTATGAGTCTCTGATCTCTAAACATGGCACCCTGAAGTCTGCTCACAAAAAT
CTTGAAGTGGAACATAAAGACCTTGAAGACCGTTACAATCAGTTATTAAAACAGAAAGGACAATTGGAAG
ATTTGGAAAAAATGATCAAAACGGAACAGGAAAAAATGCTGCTTGAAAGCAAAAACCATGAAGTGGTAGC
TTCAGAGTACAAGAAGCTTTGTGGTGAAAATGATAGGTTAAATTATACATATAGTCAGCTTTTAAAAGAG
ACTGAAATTTTACAAATGGATCATAAAAATTTGAAAAGTGTTCTAAATAATTCTAAATTGGAACAAACAA
GATTAGAAGCTGAATTTTCAAAGCTAAAGGAGCAGTATCAGCAACTAGATATCACATCTACCAAGCTAAA
TAACCAGTGTGAGTTGCTCAGCCAACTTAAAGGAAATTTAGAAGAAGAAAATCGACATCTACTTGATCAG
ATCCAGACACTAATGCTACAGAACAGAACACTGCTGGAGCAAAATATGGAAAGCAAGGATCTCTTTCATG
TTGAACAAAGACAGTACATTGATAAATTAAATGAATTGAGACGACAAAAAGAAAAATTAGAAGAGAAAAT
TATGGATCAATACAAATTTTATGACCCATCTCCTCCTAGAAGGAGAGGCAACTGGATTACTCTAAAAATG
AGAAAATTGATAAAGTCAAAAAAAGATATTAATCGGGAACGTCAGAAATCTCTAACACTAACACCCACCC
GCTCAGACTCCAGTGAAGGATTTCTTCAGCTGCCCCATCAAGACAGCCAAGACAGCTCTTCAGTAGGATC
AAACTCTTTAGAAGATGGCCAAACCCTGGGGACCAAGAAGAGCAGCACCATGAATGACCTGGTGCAGTCC
ATGGTCCTAGCAGGAGGACAGTGGACAGGTAGTACTGAAAATTTGGAGGTCCCTGATGATATTTCAACGG
GTAAAAGGAGAAAAGAATTGGGAGCTATGGCCTTCTCTACTACAGCCATCAACTTTTCAACTGTCAACTC
TTCTGCAGCCTTCCGATCCAAGCAGTTGGTTAATAATAAAGATACTACATCCTTTGAAGACATAAGTCCA
CAAGGTATTAGTGATGATTCTAGTACGGGATCAAGAGTTCATGCTTCAAGACCAGCCAGCCTTGATAGTG
GCAGAACATCCACTAGCAATAGCAATAATAATGCTTCACTCCATGAAGTCAAAGCAGGTGCAGTTAATAT
CCAAAGCAGGCCACAAAGCCACAGCAGTGGAGATTTCAGTCTGCTTCATGATCATGAGACTTGGTCTAGC
AGTGGTAGCAGTCCAATTCAGTATTTGAAAAGACAGACCAGGTCAAGCCCTATGCTCCAGCACAAAATAT
CTGAAACAATAGAGAGTCGAGCCCATCACAAGATGAAAGCTGGCTCCCCAGGAAGTGAAGTTGTTACTCT
ACAACAGTTTTTGGAAGAAAGCAACAAGCTTACCTCAATACAGTTGAAGTCCTCGAGTCAAGAGAATCTT
TTAGATGAAGTAATGAAAAGTTTGTCTGTGTCTTCCGACTTTCTGGGGAAAGACAAGCCAGTTAGCTGTA
CCCTGGCCAGGTCAGTAAGTGGAAAGACTCCAGGGGACTTCTATGATAGACGGACAACTAAGCCTGAATT
TTTGAGAACTGGTCCTCAAAAGACTGAAGATGCCTACACCATCAGCTCTGCAGGGAAACCTACACCAAGC
ACTCAAGGAAAGATAAAACTAGTAAAAGAAACCTCTGTGTCAAGACAATCAAAAGATAGCAATCCTTATG
CCACTTTACCTCGTGCAAGCAGTGTGATCTCTACTGCTGAAGGAACAACTCGAAGGACGAGCATCCATGA
TTTTTTGAGCAAAGACAGTAGACTGCCCGTGTCAGTCGATTCATCACCACCTACTGCTGGTAGCAGCAGC
ACTACAGCATCTAATGTGAACAAAGTACAAGAGAGCAGAAATTCAAAAAGCAGGTCTAGGGAGCAACAAA
GCTCCTAA

Translation (1845 aa):
MENEIFTPLLEQFMTSPLVTWVKTFGPLAAGNGTNLDEYVALVDGVFLNQVMLQINPKSESQRVNKKVNN
DASLRIHNLSILVKQIKFYYQETLQQLIMMPLPDILIIGKNPFSEQGTEEVKKLLLLLLGCAVQCQKKEE
FIEKIQGLDFDTKAAVAAHIQEVTHNQENVFDLQWMEVTDMSQEDIEPLLKNMVSHLRRLIDERDEHSET
IVELSEERDGVHFLPHASSSAQSPCGSPGMKRTESRQHLSVELADAKAKIRRLRQELEEKTEQLLDCKQE
LEQIEVELKRLQQENMNLLSDARSARMYRDELDALREKAVRVDKLESELSRYKERLHDIEFYKARVEELK
EDNQVLLETKTMLEDQLEGTRARSDKLHELEKENLQLKAKLHDMEMERDMDRKKIEELMEENMTLEMAQK
QSMDESLHLGWELEQISRTSELAEAPQKSLGHEVNELTSSKLLKLEMENQSLTKTVEELRSTADSAAGST
SKILKVEKENQRLNKKVEILENEIIQEKQSLQNCQNLSKDLMKEKAQLEKTIETLRENSERQIKILEQEN
EHLNQTVSSLRQRSQISAEARVKDIEKENKILHESIKETCGKLSKIEFEKRQMKKELELYKEKGERAEEL
ENELNHLGKENELLQKKITNLKITCEKLETLEQENSELERENRKFKKTLDSFKNLTFQLESLEKENSQLD
EENLELRRSVESLKCASMRMAQLQLENKELESEKEQLRKGLELMRASFKKTERLEVSYQGLDTENQRLQK
ALENSNKKIQQLESELQDLEMENQTLQKSLEELKISSKRLEQLEKENKSLEQETSQLEKDKKQLEKENKR
LRQQAEIKDTTLEENNVKIGNLEKENKTLFKEINVYKESCVRLKELEKENKELVKRATIDIKTLVTLRED
LVSEKLKTQQMNNDLEKLTHELEKIGLNKERLLHDEQSTDDSRYKLLESKLESTLKKSLEIKEEKIAALE
ARLEESTNYNQQLRHELKTVKKNYEALKQRQDEERMVQSSIPVSGEDDKWGRESQEATRELLKVKDRLIE
VERNNATLQAEKQALKTQLKQLETQNNNLQAQILALQRQTVSLQEQNTTLQTQNAKLQVENSTLNSQSTS
LMNQNAQLLIQQSSLENENESIMKEREDLKSLYDALIKDHEKLELLHERQASEYESLISKHGTLKSAHKN
LEVEHKDLEDRYNQLLKQKGQLEDLEKMIKTEQEKMLLESKNHEVVASEYKKLCGENDRLNYTYSQLLKE
TEILQMDHKNLKSVLNNSKLEQTRLEAEFSKLKEQYQQLDITSTKLNNQCELLSQLKGNLEEENRHLLDQ
IQTLMLQNRTLLEQNMESKDLFHVEQRQYIDKLNELRRQKEKLEEKIMDQYKFYDPSPPRRRGNWITLKM
RKLIKSKKDINRERQKSLTLTPTRSDSSEGFLQLPHQDSQDSSSVGSNSLEDGQTLGTKKSSTMNDLVQS
MVLAGGQWTGSTENLEVPDDISTGKRRKELGAMAFSTTAINFSTVNSSAAFRSKQLVNNKDTTSFEDISP
QGISDDSSTGSRVHASRPASLDSGRTSTSNSNNNASLHEVKAGAVNIQSRPQSHSSGDFSLLHDHETWSS
SGSSPIQYLKRQTRSSPMLQHKISETIESRAHHKMKAGSPGSEVVTLQQFLEESNKLTSIQLKSSSQENL
LDEVMKSLSVSSDFLGKDKPVSCTLARSVSGKTPGDFYDRRTTKPEFLRTGPQKTEDAYTISSAGKPTPS
TQGKIKLVKETSVSRQSKDSNPYATLPRASSVISTAEGTTRRTSIHDFLSKDSRLPVSVDSSPPTAGSSS
TTASNVNKVQESRNSKSRSREQQSS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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