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Report for CCDS24412.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24412.1 Public Mus musculus 11 Nudcd3 23 108 98 CCDS HistoryNCBI Gene:209586Re-query CCDS DB by CCDS ID:24412.1Re-query CCDS DB by GeneID:209586See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24412.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000066496.9 ENSMUSP00000064668.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000066496.9Link to Ensembl Protein Viewer:ENSMUSP00000064668.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000066496Re-query CCDS DB by Protein ID:ENSMUSP00000064668
Original member NCBI NM_173748.5 NP_776109.1 Updated not alive Link to Nucleotide Sequence:NM_173748.5Link to Protein Sequence:NP_776109.1Re-query CCDS DB by Nucleotide ID:NM_173748Re-query CCDS DB by Protein ID:NP_776109
Current member NCBI NM_173748.6 NP_776109.1 Accepted alive Link to Nucleotide Sequence:NM_173748.6Link to Protein Sequence:NP_776109.1Re-query CCDS DB by Nucleotide ID:NM_173748Re-query CCDS DB by Protein ID:NP_776109Link to BLAST:NP_776109.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_776109.1 363 Q8R1N4-1 363 100% 0 0

Chromosomal Locations for CCDS 24412.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 6108245 6108355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 6113243 6113431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 6125418 6125561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 6150495 6150627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 6193154 6193476 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 6199943 6200134 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1092 nt):
ATGGAGCCCGGGGCTGCTGAGCTTTATGACCAGGCCCTGTTGGGCATCCTGCAGCACGTGGGCAATGTCC
AGGACTTTCTGCGCGTGCTCTTCGGCTTTCTCTACCGCAAGACCGACTTCTACCGCCTGCTGCGCCACCC
TTCGGACCGCATGGGCTTCCCGCCCGGGGCCGCACAGGCCCTGGTGCTGCAGGTCTTTAAAACATTTGAT
CACATGGCCCGCCAGGATGATGAGAAAAGGAAGAAAGAACTAGAAGAGAAAATAAGAAAAAAGGAGGAAG
AGGCCAAGGCCTTGCCAGCTGCTGAAACTGAGAAGGTAGCGGTGCCGGTCCCAGTGCAGGAGGTAGAGAT
CGATGCTGCTGCAGACTTGAGTGGGCCTCAGGAAGTAGAGAAGGAGGAGCCCCCAGGCTCCCAGGACCCC
GAGCACACAGTGACCCATGGCCTGGAGAAGGCGGAAGCTCCAGGAACAGTTAGCAGTGCTGCTGAAGGCC
CTAAGGACCCTCCTGTGCTCCCCAGGATTCAGGAGCAGTTCCAGAAAAATCCTGACAGTTACAACGGTGC
CATCCGTGAGAACTACATCTGGTCGCAAGACTACACCGACCTGGAGGTCAGGGTGCCCGTGCCCAAGCAT
GTGATGAAGGGGAAGCAGGTCTCTGTGGCCCTTAGCAGTGGCACCATCCGAGTGGCCATGGTGGAAGAGA
ATGGAGAGCGTGTCCTCATGGAGGGGAAGCTCACTCACAAGATCAACACCGAGAGCTCCCTCTGGAGCCT
TGAGCCCGGCAGGTGTGTTTTGGTGAATCTGAGCAAGGTTGGCGAGTACTGGTGGAGTGCCATCCTGGAG
GGGGAAGAGCCCATCGACATCGACAAGATCAACAAGGAGCGCTCCATGGCTACTGTGGATGAGGAGGAGC
AGGCAGTCCTGGACAGACTCACCTTTGACTACCACCAGAAACTGCAGGGCAAGCCCCAGAGCCACGAGCT
GAAAGTCCATGAGATGCTGAAGAAGGGGTGGGATGCTGAAGGCTCTCCCTTCCGAGGCCAGCGATTCGAC
CCAGCCATGTTCAACATCTCCCCAGGGGCTGTGCAGTTTTAA

Translation (363 aa):
MEPGAAELYDQALLGILQHVGNVQDFLRVLFGFLYRKTDFYRLLRHPSDRMGFPPGAAQALVLQVFKTFD
HMARQDDEKRKKELEEKIRKKEEEAKALPAAETEKVAVPVPVQEVEIDAAADLSGPQEVEKEEPPGSQDP
EHTVTHGLEKAEAPGTVSSAAEGPKDPPVLPRIQEQFQKNPDSYNGAIRENYIWSQDYTDLEVRVPVPKH
VMKGKQVSVALSSGTIRVAMVEENGERVLMEGKLTHKINTESSLWSLEPGRCVLVNLSKVGEYWWSAILE
GEEPIDIDKINKERSMATVDEEEQAVLDRLTFDYHQKLQGKPQSHELKVHEMLKKGWDAEGSPFRGQRFD
PAMFNISPGAVQF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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