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Report for CCDS24399.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24399.1 Public Mus musculus 11 Kremen1 23 108 98 CCDS HistoryNCBI Gene:84035Re-query CCDS DB by CCDS ID:24399.1Re-query CCDS DB by GeneID:84035See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24399.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000020662.14 ENSMUSP00000020662.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000020662.14Link to Ensembl Protein Viewer:ENSMUSP00000020662.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000020662Re-query CCDS DB by Protein ID:ENSMUSP00000020662
Original member Current member NCBI NM_032396.3 NP_115772.2 Accepted alive Link to Nucleotide Sequence:NM_032396.3Link to Protein Sequence:NP_115772.2Re-query CCDS DB by Nucleotide ID:NM_032396Re-query CCDS DB by Protein ID:NP_115772Link to BLAST:NP_115772.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_115772.2 473 Q99N43 473 100% 0 0

Chromosomal Locations for CCDS 24399.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 5194953 5195121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 5198310 5198394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 5199502 5199711 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 5201697 5202029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 5209939 5210092 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 5215407 5215531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 5238411 5238502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 5243775 5243937 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 5261435 5261525 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1422 nt):
ATGGCGCCGCCCGCCGCCCGTCTCGCGCTGCTCTCCGCCGCTGCGCTCACTCTGGCGGCCCGGCCCGCGC
CCGGTCCCCGCTCCGGCCCCGAGTGCTTCACAGCCAACGGTGCAGATTACAGGGGAACACAGAGCTGGAC
AGCGCTGCAAGGTGGGAAGCCATGTCTGTTCTGGAACGAGACTTTCCAGCATCCGTACAACACGCTGAAG
TACCCCAACGGGGAAGGAGGACTGGGCGAGCACAATTATTGCAGAAATCCAGATGGAGACGTGAGCCCTT
GGTGCTACGTGGCCGAGCATGAGGACGGAGTCTACTGGAAGTACTGTGAAATTCCTGCCTGCCAGATGCC
TGGAAACCTTGGCTGCTACAAGGATCATGGAAACCCACCTCCTCTCACGGGCACCAGTAAAACCTCTAAC
AAGCTCACCATACAAACCTGTATCAGCTTCTGTCGGAGTCAGAGATTCAAGTTTGCTGGGATGGAGTCAG
GCTATGCCTGCTTCTGTGGGAACAATCCTGACTACTGGAAGCACGGGGAGGCGGCCAGCACCGAGTGCAA
TAGTGTCTGCTTCGGGGACCACACGCAGCCCTGCGGTGGGGACGGCAGGATTATCCTCTTTGACACTCTC
GTGGGCGCCTGCGGTGGGAACTACTCAGCCATGGCAGCCGTGGTGTACTCCCCTGACTTCCCTGACACCT
ACGCCACTGGCAGAGTCTGCTACTGGACCATCCGGGTTCCAGGAGCCTCTCGCATCCATTTCAACTTCAC
CCTGTTTGATATCAGGGACTCTGCAGACATGGTGGAGCTGCTGGACGGCTACACCCACCGCGTCCTGGTC
CGGCTCAGTGGGAGGAGCCGCCCGCCTCTGTCTTTCAATGTCTCTCTGGATTTTGTCATTTTGTATTTCT
TCTCTGATCGCATCAATCAGGCCCAGGGATTTGCTGTGTTGTACCAAGCCACCAAGGAGGAACCGCCACA
GGAGAGACCTGCTGTCAACCAGACCCTGGCAGAGGTGATCACCGAGCAAGCCAACCTCAGTGTCAGCGCT
GCCCACTCCTCCAAAGTCCTCTATGTCATCACCCCCAGCCCCAGCCACCCTCCGCAGACTGCCCCAGGTA
GCCATTCCTGGGCACCGTCAGTTGGGGCCAACAGCCACAGAGTGGAAGGATGGACTGTGTACGGCCTGGC
GACCCTCCTCATCCTCACAGTCACAGCAGTTGTCGCAAAGATTCTTCTGCATGTCACATTTAAATCTCAT
CGAGTCCCTGCATCAGGAGACCTTAGGGACTGTCGTCAGCCTGGGGCTTCTGGAGATATCTGGACCATTT
TCTATGAACCTTCCACTACAATCTCCATCTTTAAGAAGAAGCTCAAGGGTCAGAGTCAACAAGATGACCG
CAATCCCCTCGTGAGTGACTGA

Translation (473 aa):
MAPPAARLALLSAAALTLAARPAPGPRSGPECFTANGADYRGTQSWTALQGGKPCLFWNETFQHPYNTLK
YPNGEGGLGEHNYCRNPDGDVSPWCYVAEHEDGVYWKYCEIPACQMPGNLGCYKDHGNPPPLTGTSKTSN
KLTIQTCISFCRSQRFKFAGMESGYACFCGNNPDYWKHGEAASTECNSVCFGDHTQPCGGDGRIILFDTL
VGACGGNYSAMAAVVYSPDFPDTYATGRVCYWTIRVPGASRIHFNFTLFDIRDSADMVELLDGYTHRVLV
RLSGRSRPPLSFNVSLDFVILYFFSDRINQAQGFAVLYQATKEEPPQERPAVNQTLAEVITEQANLSVSA
AHSSKVLYVITPSPSHPPQTAPGSHSWAPSVGANSHRVEGWTVYGLATLLILTVTAVVAKILLHVTFKSH
RVPASGDLRDCRQPGASGDIWTIFYEPSTTISIFKKKLKGQSQQDDRNPLVSD


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
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