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Report for CCDS24390.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24390.1 Public Mus musculus 11 Cabp7 23 108 98 CCDS HistoryNCBI Gene:192650Re-query CCDS DB by CCDS ID:24390.1Re-query CCDS DB by GeneID:192650See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24390.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000009219.2 ENSMUSP00000009219.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000009219.2Link to Ensembl Protein Viewer:ENSMUSP00000009219.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000009219Re-query CCDS DB by Protein ID:ENSMUSP00000009219
Original member Current member NCBI NM_138948.4 NP_620398.1 Accepted alive Link to Nucleotide Sequence:NM_138948.4Link to Protein Sequence:NP_620398.1Re-query CCDS DB by Nucleotide ID:NM_138948Re-query CCDS DB by Protein ID:NP_620398Link to BLAST:NP_620398.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_620398.1 215 Q91ZM8 215 100% 0 0

Chromosomal Locations for CCDS 24390.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 4738821 4738948 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 4739124 4739277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 4739554 4739666 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 4740369 4740512 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 4746619 4746727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (648 nt):
ATGCCGTTCCACCCGGTGACGGCGGCGTTGATGTACCGGGGCATCTACACCGTGCCCAACCTGCTGTCGG
AGCAGCGCCCGGTGGATATCCCTGAGGACGAGCTAGAGGAGATCCGAGAGGCCTTCAAGGTATTCGACCG
GGATGGCAACGGCTTCATCTCTAAGCAGGAGCTGGGAACAGCCATGCGCTCCCTGGGTTACATGCCCAAC
GAGGTGGAGCTGGAGGTTATCATCCAGCGGCTAGACATGGATGGTGACGGCCAAGTGGACTTTGAGGAGT
TTGTAACCCTCCTGGGACCCAAGCTCTCCACCTCGGGGATCCCAGAGAAGTTCCATGGCACTGACTTTGA
CACGGTCTTCTGGAAGTGTGACATGCAGAAGCTGACAGTGGATGAGCTGAAGCGGCTTCTCTATGACACC
TTCTGCGAGCACTTGTCCATGAAGGACATAGAGAACATCATCATGACAGAGGAGGAGAGCCACCTGGGCA
CTGCTGAGGAGTGTCCCGTGGACGTGGAGACCTGTTCCAACCAGCAGATCCGCCAGACGTGTGTGCGCAA
GAGCCTGATCTGCGCCTTCGCCATCGCCTTCATCATCAGTGTCATGCTCATCGCGGCCAACCAGGTGCTG
CGCAGCGGCATGAAGTAG

Translation (215 aa):
MPFHPVTAALMYRGIYTVPNLLSEQRPVDIPEDELEEIREAFKVFDRDGNGFISKQELGTAMRSLGYMPN
EVELEVIIQRLDMDGDGQVDFEEFVTLLGPKLSTSGIPEKFHGTDFDTVFWKCDMQKLTVDELKRLLYDT
FCEHLSMKDIENIIMTEEESHLGTAEECPVDVETCSNQQIRQTCVRKSLICAFAIAFIISVMLIAANQVL
RSGMK


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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