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Report for CCDS24356.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24356.1 Public Mus musculus 11 Patz1 23 108 98 CCDS HistoryNCBI Gene:56218Re-query CCDS DB by CCDS ID:24356.1Re-query CCDS DB by GeneID:56218See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24356.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000057089.12 ENSMUSP00000050684.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000057089.12Link to Ensembl Protein Viewer:ENSMUSP00000050684.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000057089Re-query CCDS DB by Protein ID:ENSMUSP00000050684
Original member Current member NCBI NM_019574.3 NP_062520.1 Accepted alive Link to Nucleotide Sequence:NM_019574.3Link to Protein Sequence:NP_062520.1Re-query CCDS DB by Nucleotide ID:NM_019574Re-query CCDS DB by Protein ID:NP_062520Link to BLAST:NP_062520.1

Chromosomal Locations for CCDS 24356.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 3290614 3291884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 3293280 3293343 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 3299034 3299205 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 3307648 3308066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1926 nt):
ATGGAGCGGGTCAACGACGCTTCTTGCGGTCCGTCGGGCTGCTACACCTACCAGGTGAGCAGACACAGTA
CGGAGATGCTGCACAACCTGAACCAACAACGCAAAAACGGCGGGCGCTTTTGCGACGTGCTCCTACGAGT
AGGCGACGAGAGCTTCCCAGCGCACCGCGCCGTACTGGCTGCCTGCAGCGAGTACTTTGAGTCTGTGTTC
AGCGCCCAGTTAGGCGACGGCGGAGCTGCAGATGGTGGTCCTGCTGATGTGGGAGGCGCGGCGGCGGCTC
CAGGCGGCGGAGCTGGAGGCAGCCGCGAACTGGAGATGCACACCATCAGTTCCAAAGTGTTCGGAGACAT
CCTGGACTTCGCTTATACGTCCCGAATCGTTGTGCGCCTAGAGAGCTTCCCCGAGCTCATGACGGCCGCC
AAGTTCCTGCTGATGAGGTCGGTCATCGAGATCTGCCAGGAAGTAATCAAACAGTCCAACGTGCAGATCC
TCGTGCCCCCTGCCCGGGCTGATATCATGCTCTTTCGCCCACCTGGGACTTCTGACTTGGGCTTCCCTTT
GGACATGACCAACGGGGCAGCCATGGCAGCCAACAGTAACGGTATTGCTGGCAGTATGCAGCCCGAGGAG
GAGGCTGCCAGGGCCACAGGTGCTGCTATTGCGGGCCAAGCTTCTCTGCCTGTGTTACCCGGGGTGGACA
GATTGCCCATGGTGGCTGGACCCCTATCCCCCCAACTACTGACTTCTCCGTTCCCTAATGTGGCATCCAG
TGCACCTCCACTAACTAGCAAGCGAGGCCGGGGACGCCCCAGGAAGGCCAACCTGCTGGACTCCATGTTT
GGGTCTCCAGGGGGCTTGAGGGAAGCAGGCATCCTTCCATGTGGCCTGTGCGGGAAGGTGTTCACTGACG
CCAACCGGCTCCGGCAACATGAGGCCCAGCACGGCGTCACAAGCCTCCAGTTGGGCTATATCGATCTTCC
TCCTCCAAGGCTGGGTGAGAATGGGTTACCCATCTCCGAGGACCCCGATGGCCCCAGAAAAAGGAGCCGG
ACCAGGAAGCAAGTGGCTTGTGAGATCTGTGGCAAGATCTTTCGTGACGTATACCATCTCAACCGGCATA
AGCTTTCCCACTCGGGGGAGAAGCCGTACTCGTGCCCGGTGTGTGGTCTGCGGTTCAAGAGAAAAGACCG
AATGTCGTACCATGTGAGGTCCCATGATGGGTCAGTGGGCAAACCGTACATCTGCCAGAGCTGTGGGAAA
GGTTTCTCCAGGCCAGATCACTTGAATGGACATATCAAGCAGGTGCACACTTCTGAGCGACCTCACAAGT
GTCAGACCTGCAATGCCTCCTTTGCGACTCGAGACCGCCTGCGCTCCCACCTGGCCTGTCATGAAGACAA
GGTGCCCTGCCAGGTGTGTGGAAAGTACTTGCGGGCCGCATACATGGCAGACCACCTGAAGAAGCACAGT
GAGGGGCCCAGCAACTTCTGTAGCATCTGTAACCGAGAAGGCCAGAAATGCTCACATCAGGATCTGATTG
AGAGCTCCGACTCCTACGGTGACCTCTCCGACGCCAGCGACCTGAAGACGCCAGAGAAACAGAGTGCCAA
CGGCTCCTTCTCCTGCGACGTGGCAGTCCCTAAAAACAAAATGGAGTCTGACGGGGAGAAGAAGTACCCA
TGCCCTGAATGTGGGAGCTTCTTCCGTTCTAAGTCCTACTTGAACAAACACATCCAGAAGGTGCATGTCC
GTGCCCTTGGGGGTCCCTTGGGGGACCTGGGCCCTGCCCTTGGTTCACCTTTCTCTCCCCAGCAGAACAT
GTCTCTTCTTGAGTCCTTTGGATTTCAGATTGTTCAGTCAGCGTTTGCATCATCTTTAGTGGATCCTGAG
GTGGACCAGCAGCCCATGGGGCCTGAAGGGAAGTGA

Translation (641 aa):
MERVNDASCGPSGCYTYQVSRHSTEMLHNLNQQRKNGGRFCDVLLRVGDESFPAHRAVLAACSEYFESVF
SAQLGDGGAADGGPADVGGAAAAPGGGAGGSRELEMHTISSKVFGDILDFAYTSRIVVRLESFPELMTAA
KFLLMRSVIEICQEVIKQSNVQILVPPARADIMLFRPPGTSDLGFPLDMTNGAAMAANSNGIAGSMQPEE
EAARATGAAIAGQASLPVLPGVDRLPMVAGPLSPQLLTSPFPNVASSAPPLTSKRGRGRPRKANLLDSMF
GSPGGLREAGILPCGLCGKVFTDANRLRQHEAQHGVTSLQLGYIDLPPPRLGENGLPISEDPDGPRKRSR
TRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGK
GFSRPDHLNGHIKQVHTSERPHKCQTCNASFATRDRLRSHLACHEDKVPCQVCGKYLRAAYMADHLKKHS
EGPSNFCSICNREGQKCSHQDLIESSDSYGDLSDASDLKTPEKQSANGSFSCDVAVPKNKMESDGEKKYP
CPECGSFFRSKSYLNKHIQKVHVRALGGPLGDLGPALGSPFSPQQNMSLLESFGFQIVQSAFASSLVDPE
VDQQPMGPEGK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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