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Report for CCDS24334.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24334.1 Public Mus musculus 10 Or6c214 23 108 98 CCDS HistoryNCBI Gene:258931Re-query CCDS DB by CCDS ID:24334.1Re-query CCDS DB by GeneID:258931See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 24334.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000059038.2 ENSMUSP00000049924.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000059038.2Link to Ensembl Protein Viewer:ENSMUSP00000049924.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000059038Re-query CCDS DB by Protein ID:ENSMUSP00000049924
Original member Current member EBI ENSMUST00000213379.1 ENSMUSP00000149172.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000213379.1Link to Ensembl Protein Viewer:ENSMUSP00000149172.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000213379Re-query CCDS DB by Protein ID:ENSMUSP00000149172
Original member Current member EBI ENSMUST00000217106.1 ENSMUSP00000150657.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000217106.1Link to Ensembl Protein Viewer:ENSMUSP00000150657.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000217106Re-query CCDS DB by Protein ID:ENSMUSP00000150657
Original member Current member NCBI NM_146929.1 NP_667140.1 Accepted alive Link to Nucleotide Sequence:NM_146929.1Link to Protein Sequence:NP_667140.1Re-query CCDS DB by Nucleotide ID:NM_146929Re-query CCDS DB by Protein ID:NP_667140Link to BLAST:NP_667140.1

Chromosomal Locations for CCDS 24334.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 129754513 129755448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (936 nt):
ATGAGAAACCATACATTGGTGACAACCTTTATTCTTCTGGGATTGACAGAAGACCCAAAGTGGCAAATTG
TAATCTTCCTTTTCCTATTTATGACATATGTGCTGAGCATCACTGGAAATCTTACTATTATCCTTCTCAC
CCTGTTGGATTCCAACCTCAAAACGCCCATGTATTTCTTCCTTCAGAAGTTTTCCTTCTTAGAAATCTCT
CTGACATCTACTTGCATCCCTAGGTTCCTGGTCAGCATAGTGACCATGGATAAAACTATTTCAGTGGAGG
CTTGCTTCACACAGTTATTTGCTGCCTTTATCTTTGGCATAGCACAGTTTTTCTTGCTGGCTGTCATGTC
CTATGACCGCTATGTGGCCATTTGTAGACCCCTTCATTATACAACCATCATGAACAACAGAGTCTGTACA
TTGCTGTTTGTCAGCTGCTGTTTAATTGCTGTGTTTGCGATCTGCCCTGGAGTCATTGTGAGTCTGAGTT
TGGAATTCTGTGATACTATTATTGAACATTTTTTCTGTGACTACTCCCCCATCTTGAAGCTTTCCTGCAA
TGATACAAGGTTCATGCAACTGCTCAACTTCATTTTTGCCATCTTTATTCTCCTGATGACCTTGGCACTG
GTAATGTTCTCTTATGGGAAAATCATAAGTACAATTCTGAGGTTCCCCTCTGCTCAGCAGCAGAAGAAGG
CCTTCTCCACCTGTTCCTCACACATGATTGTTGTCTCCATCTCTTATGGCAGCTGCATTTTTATGTACAT
CAAACCTTCTGCTGAGGAGAGGATATATTTAAATAAGGGGATTGCCATTCTCACTCTTGCACTTGCACCT
GTACTAAACCCTTTTATATATACCCTAAGAAATAAGCAAGTCAAAGAAGCCCTAAAGGACATCATTAAAA
AGTGTACCTCAGCTACTTCAAAGTAG

Translation (311 aa):
MRNHTLVTTFILLGLTEDPKWQIVIFLFLFMTYVLSITGNLTIILLTLLDSNLKTPMYFFLQKFSFLEIS
LTSTCIPRFLVSIVTMDKTISVEACFTQLFAAFIFGIAQFFLLAVMSYDRYVAICRPLHYTTIMNNRVCT
LLFVSCCLIAVFAICPGVIVSLSLEFCDTIIEHFFCDYSPILKLSCNDTRFMQLLNFIFAIFILLMTLAL
VMFSYGKIISTILRFPSAQQQKKAFSTCSSHMIVVSISYGSCIFMYIKPSAEERIYLNKGIAILTLALAP
VLNPFIYTLRNKQVKEALKDIIKKCTSATSK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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