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Report for CCDS24278.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24278.1 Public Mus musculus 10 Smarcc2 23 108 98 CCDS HistoryNCBI Gene:68094Re-query CCDS DB by CCDS ID:24278.1Re-query CCDS DB by GeneID:68094See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24278.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000026433.8 ENSMUSP00000026433.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000026433.8Link to Ensembl Protein Viewer:ENSMUSP00000026433.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000026433Re-query CCDS DB by Protein ID:ENSMUSP00000026433
Original member Current member NCBI NM_198160.2 NP_937803.1 Accepted alive Link to Nucleotide Sequence:NM_198160.2Link to Protein Sequence:NP_937803.1Re-query CCDS DB by Nucleotide ID:NM_198160Re-query CCDS DB by Protein ID:NP_937803Link to BLAST:NP_937803.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_937803.1 1099 Q6PDG5-2 1099 100% 0 0

Chromosomal Locations for CCDS 24278.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 128459327 128459437 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128461352 128461471 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128462981 128463066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128463692 128463773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128463867 128463959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128465157 128465226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128465437 128465506 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128468795 128468870 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128469006 128469137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128469242 128469357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128469665 128469789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128474201 128474260 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128474372 128474409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128474683 128474813 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128474993 128475064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128480350 128480463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128480851 128481004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128482083 128482202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128482291 128482353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128482684 128482942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128483175 128483336 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128483591 128483655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128484079 128484214 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128484297 128484463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128485560 128485694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128487255 128487636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128487934 128488017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128488896 128488972 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3300 nt):
ATGGCGGTGCGGAAGAAGGACGGCGGCCCCAACGTGAAGTACTACGAGGCCGCGGACACCGTGACCCAGT
TC
GACAACGTGCGGCTCTGGCTCGGCAAGAACTACAAGAAGTACATACAAGCAGAACCGCCAACCAACAA
G
TCTCTGTCCAGCCTGGTGGTGCAGTTGCTCCAGTTTCAGGAAGAGGTTTTTGGCAAACATGTCAGCAAC
GCA
CCGCTTACTAAACTGCCGATCAAATGTTTCCTAGATTTCAAAGCAGGAGGATCCCTCTGCCATATTC
TT
GCAGCTGCCTACAAATTCAAGAGTGACCAGGGATGGCGGCGTTACGATTTCCAGAATCCATCACGCAT
G
GACCGCAATGTGGAAATGTTCATGACCATTGAGAAGTCCTTGGTACAGAATAATTGCCTGTCACGACCT
AAC
ATTTTCCTCTGCCCAGAAATTGAGCCCAAACTGCTAGGGAAATTAAAAGACATTGTTAAGAGACACC
AG
GGAACCATCTCTGAGGATAAGAGCAATGCCTCCCATGTTGTGTATCCTGTCCCAGGGAACCTAGAAGA
A
GAGGAATGGGTACGGCCAGTCATGAAGAGGGATAAACAGGTTCTTCTGCACTGGGGCTACTATCCTGAC
AG
C
TACGACACGTGGATCCCAGCGAGTGAAATTGAAGCATCTGTGGAGGACGCTCCCACTCCTGAGAAAC
CG
AGGAAGGTCCATGCGAAGTGGATCCTCGACACCGACACATTCAACGAGTGGATGAATGAGGAAGACTA
C
GAAGTCAGTGACGACAAAAGCCCAGTCTCCCGCAGGAAGAAGATCTCAGCCAAGACGCTGACAGACGAG
GTA
AACAGCCCAGATTCAGACAGACGAGACAAGAAGGGGGGCAACTATAAGAAGAGGAAGCGCTCTCCCT
CT
CCTTCACCCACCCCAGAGGCTAAGAAGAAAAACGCTAAGAAAGGACCCTCAACACCTTATACCAAGTC
A
AAGCGAGGCCACAGAGAAGAGGAACAAGAAGACCTGACAAAAGACATGGATGAGCCCTCTCCAGTCCCA
AAC
GTGGAAGAGGTGACACTCCCCAAAACAGTCAACACTAAAAAGGACTCTGAGTCAGCCCCAGTCAAAG
GC
GGCACCATGACTGACCTGGATGAACAGGACGATGAAAGCATGGAGACCACCGGCAAGGACGAGGATGA
G
AACAGCACGGGCAACAAAGGCGAGCAGACGAAGAACCCGGACCTGCATGAGGACAATGTGACCGAGCAG
ACC
CACCACATCATCATCCCCAGCTACGCCGCCTGGTTTGACTACAACAGCGTCCATGCCATTGAACGGA
GG
GCTCTTCCTGAGTTCTTCAACGGCAAGAACAAGTCTAAGACTCCAGAGATCTACCTGGCGTATCGGAA
C
TTCATGATTGACACTTACCGACTGAATCCCCAGGAGTATCTAACATCTACTGCCTGTCGGCGGAATTTG
GCG
GGTGATGTCTGCGCTATCATGAGGGTCCATGCCTTCCTGGAACAGTGGGGTCTTATTAACTACCAGG
TA
GATGCTGAGAGCCGACCAACCCCAATGGGGCCTCCACCCACCTCTCACTTCCATGTCTTGGCGGACAC
A
CCATCAGGGCTGGTTCCTCTTCAGCCGAAGCCTCCACAGCAGAGCTCTGCTTCCCAGCAAATGCTGAAC
TTC
CCTGAGAAGGGCAAGGAGAAACCAGCAGACATGCAGAATTTTGGGCTGCGCACAGACATGTACACAA
AG
AAGAACGTCCCCTCCAAGAGCAAAGCTGCAGCAAGTGCCACTCGGGAATGGACGGAGCAGGAGACTCT
G
CTGCTCCTGGAGGCTTTGGAAATGTACAAGGACGACTGGAACAAAGTATCTGAGCACGTGGGAAGCCGC
ACG
CAGGACGAGTGCATCTTGCATTTTCTCCGCCTTCCCATTGAAGACCCATACCTGGAGGACTCGGAGG
CT
TCTCTAGGCCCTCTGGCCTACCAACCCATCCCCTTCAGTCAGTCAGGCAACCCTGTTATGAGCACCGT
T
GCCTTCCTGGCCTCTGTCGTCGATCCCCGAGTTGCCTCTGCTGCTGCGAAGTCAGCCCTAGAAGAGTTC
TCA
AAAATGAAGGAAGAGGTGCCCACAGCTTTGGTGGAAGCCCACGTGCGTAAGGTCGAAGAAGCGGCCA
AA
GTCACAGGCAAGGCCGACCCAGCCTTTGGTCTGGAGAGTAGCGGCATCGCAGGGACTGCCTCTGATGA
G
CCTGAGCGCATTGAGGAAAGCGGGACTGAGGAGGCACGGCCAGAGGGCCAGGCAGCAGATGAGAAGAAG
GAG
CCTAAGGAACCACGGGAAGGAGGGGGCGCTGTGGAGGAAGAAGCAAAGGAGGAAATAAGTGAGGTCC
CC
AAGAAAGATGAAGAGAAAGGGAAAGAAGGTGACAGTGAGAAGGAGTCTGAGAAGAGTGACGGGGACCC
G
ATAGTTGATCCTGAGAAAGACAAGGAACCAACAGAAGGGCAGGAGGAAGTGCTAAAGGAAGTGGCAGAG
CCA
GAGGGGGAGAGGAAAACCAAGGTGGAGCGTGACATTGGTGAAGGCAACCTGTCCACAGCTGCAGCCG
CA
GCCCTGGCCGCTGCTGCAGTCAAGGCCAAGCACTTGGCTGCAGTTGAGGAGAGAAAGATCAAGTCTTT
G
GTGGCTCTGCTGGTAGAGACCCAAATGAAGAAACTAGAGATCAAACTCCGACATTTTGAGGAGCTGGAG
ACA
ATAATGGACCGGGAGCGAGAGGCGCTGGAATACCAGAGGCAGCAGCTCCTGGCCGACCGGCAAGCCT
TC
CACATGGAGCAGCTGAAGTATGCAGAGATGAGGGCCCGGCAGCAGCACTTCCAGCAGATGCACCAGCA
G
CAGCAGCAGCAGCCACCAACCTTGCCCCCAGGCTCCCAGCCCATACCTCCCACCGGGGCTGCTGGACCA
CCT
ACAGTCCATGGTCTAGCTGTGCCTCCAGCCGCTGTGGCCTCTGCCCCTCCTGGCAGTGGGGCCCCTC
CT
GGAAGCTTGGGCCCTTCTGAACAGATTGGGCAGGCAGGGACAACTGCAGGGCCACAGCAGCCACAACA
A
GCTGGAGCCCCTCAGCCTGGGGCAGTCCCACCAGGGGTACCCCCCCCTGGACCCCATGGCCCCTCACCG
TTC
CCCAACCAACCAACTCCTCCCTCAATGATGCCAGGGGCAGTGCCAGGCAGCGGGCACCCAGGCGTGG
CG
GACCCAGGCACCCCGCTGCCTCCAGACCCCACAGCTCCAAGCCCAGGCACAGTCACCCCTGTGCCACC
T
CCACAGTGA


Translation (1099 aa):
MAVRKKDGGPNVKYYEAADTVTQFDNVRLWLGKNYKKYIQAEPPTNKSLSSLVVQLLQFQEEVFGKHVSN
A
PLTKLP
IKCFLDFKAGGSLCHILAAAYKFKSDQGWRRYDFQNPSRMDRNVEMFMTIEKSLVQNNCLSRP
N
IFLCPEIEPKLLGKLKDIVKRHQ
GTISEDKSNASHVVYPVPGNLEEEEWVRPVMKRDKQVLLHWGYYPD
S
YDTWIPASEIEASVEDAPTPEKPRKVHAKWILDTDTFNEWMNEEDYEVSDDKSPVSRRKKISAKTLTDE
V
NSPDSDRRDKKGGNYKKRKRSPSPSPTPEAKKKNAKK
GPSTPYTKSKRGHREEEQEDLTKDMDEPSPVP
N
VEEVTLPKT
VNTKKDSESAPVKGGTMTDLDEQDDESMETTGKDEDENSTGNKGEQTKNPDLHEDNVTEQ
T
HHIIIPSYAAWFDYN
SVHAIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQEYLTSTACRRNL
A
GDVCAIM
RVHAFLEQWGLINYQVDAESRPTPMGPPPTSHFHVLADTPSGLVPLQPKPPQQSSASQQMLN
F
PEKGKEKPADMQNFGLRTDMYTKKNVPSK
SKAAASATREWTEQETLLLLEALEMYKDDWNKVSEHVGSR
T
QDECILHFLRLPIEDPYLEDSEASLGPLAYQPIPFSQSGNPVMSTVAFLASVVDPRVASAAAKSAL
EEF
S
KMKEEVPTALVEAHVRKVEEAAKVTGKADPAFGLESSGIAGTASDEPERI
EESGTEEARPEGQAADEKK
E
PK
EPREGGGAVEEEAKEEISEVPKKDEEKGKEGDSEKESEKSDGDPIVDPEKDKEPTEGQEEVLKEVAE
P
EGERKTKVERDIGEGNLSTAAAAALAAAAVKAK
HLAAVEERKIKSLVALLVETQMKKLEIKLRHFEELE
T
IMDREREA
LEYQRQQLLADRQAFHMEQLKYAEMRARQQHFQQMHQQQQQQPPTLPPGSQPIPPTGAAGP
P
TVHGLAVPPAAVASAPPGSGAPPGSLGPSEQIGQAGTTAGPQQPQQAGAPQPGAVPPGVPPPGPH
GPSP
F
PNQPTPPSMMPGAVPGSGHPGVA
DPGTPLPPDPTAPSPGTVTPVPPPQ



Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser