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Report for CCDS24169.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24169.1 Public Mus musculus 10 Glipr1 23 108 98 CCDS HistoryNCBI Gene:73690Re-query CCDS DB by CCDS ID:24169.1Re-query CCDS DB by GeneID:73690See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24169.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000074805.11 ENSMUSP00000074359.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000074805.11Link to Ensembl Protein Viewer:ENSMUSP00000074359.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000074805Re-query CCDS DB by Protein ID:ENSMUSP00000074359
Original member Current member EBI ENSMUST00000162508.8 ENSMUSP00000123990.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000162508.8Link to Ensembl Protein Viewer:ENSMUSP00000123990.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000162508Re-query CCDS DB by Protein ID:ENSMUSP00000123990
Original member Current member NCBI NM_028608.3 NP_082884.1 Accepted alive Link to Nucleotide Sequence:NM_028608.3Link to Protein Sequence:NP_082884.1Re-query CCDS DB by Nucleotide ID:NM_028608Re-query CCDS DB by Protein ID:NP_082884Link to BLAST:NP_082884.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082884.1 255 Q9CWG1 255 100% 0 0

Chromosomal Locations for CCDS 24169.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 111985528 111985682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 111985778 111985804 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 111986589 111986674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 111988800 111988885 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 111993441 111993680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 111996858 111997031 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (768 nt):
ATGCAGGTCATCCTTGCTGTGATAGTCTGGATGGCTTCGTCTGTGTCTAGTTCTTCATTTACAGCAAGCA
CTTTGCCAGATATAACAAACGAGGACTTCATTAAAGAATGTGTTCAAGTTCACAACCAGCTTCGGTCAAA
AGTGAGTCCACCAGCCCGGAATATGCTGTACATGTCTTGGGACCCAAAACTAGCCCAAATTGCAAAAGCA
TGGACAAAATCTTGTGAATTTAAACACAACCCACAGCTGCATTCACGGATACACCCAAATTTCACCGCCC
TGGGAGAGAATATCTGGCTTGGCTCTCTATCCATCTTTTCAGTATCCTCAGCCATCTCTGCCTGGTATGA
AGAAATTAAGCACTATGACTTCAGCACTAGGAAATGTAGACATGTCTGTGGCCATTATACTCAGGTTGTT
TGGGCAGACAGTTACAAACTTGGCTGTGCAGTGCAACTTTGCCCTAATGGAGCAAATTTTATATGCGACT
ATGGACCAGCAGGAAATTACCCAACGTGGCCATATAAGCAAGGAGCCACGTGCAGTGATTGCCCAAAAGA
TGACAAGTGTCTCAACAGTCTCTGCATTAACCCACGACGAGACCAGGTCTCACGTTACTACTCTGTCGAT
TATCCAGACTGGCCTATATACCTGCGTAACAGATACACATCTCTCTTTCTCATTGCTAAGTCGGTTCTCC
TATTACTGTCTGTTATAATTACCATCTGGGTAAAGCACAAATATCCTAACTTGGTTCTTTTGGACTAA

Translation (255 aa):
MQVILAVIVWMASSVSSSSFTASTLPDITNEDFIKECVQVHNQLRSKVSPPARNMLYMSWDPKLAQIAKA
WTKSCEFKHNPQLHSRIHPNFTALGENIWLGSLSIFSVSSAISAWYEEIKHYDFSTRKCRHVCGHYTQVV
WADSYKLGCAVQLCPNGANFICDYGPAGNYPTWPYKQGATCSDCPKDDKCLNSLCINPRRDQVSRYYSVD
YPDWPIYLRNRYTSLFLIAKSVLLLLSVIITIWVKHKYPNLVLLD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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