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Report for CCDS24168.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24168.1 Public Mus musculus 10 Krr1 23 108 98 CCDS HistoryNCBI Gene:52705Re-query CCDS DB by CCDS ID:24168.1Re-query CCDS DB by GeneID:52705See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24168.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000163048.7 ENSMUSP00000125746.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000163048.7Link to Ensembl Protein Viewer:ENSMUSP00000125746.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000163048Re-query CCDS DB by Protein ID:ENSMUSP00000125746
Original member Current member NCBI NM_178610.4 NP_848725.2 Accepted alive Link to Nucleotide Sequence:NM_178610.4Link to Protein Sequence:NP_848725.2Re-query CCDS DB by Nucleotide ID:NM_178610Re-query CCDS DB by Protein ID:NP_848725Link to BLAST:NP_848725.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_848725.2 380 Q8BGA5 380 100% 0 0

Chromosomal Locations for CCDS 24168.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 111972793 111972874 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 111975485 111975657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 111976742 111976876 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 111977112 111977237 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 111977315 111977398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 111979091 111979147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 111979887 111980057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 111982801 111982878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 111982964 111983057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 111984539 111984681 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1143 nt):
ATGGCAACTTCTGCGGAGGCGCCTGCCAAAGAAGCTCAAAAACGTGACTCTCAGCCGCAGAAACAGAAGC
GTGAGACCCAAGATGAGGCGGAGCTCCTCACTGTCCCTGATGGTTGGAAGGAACCAGCTTTTTCCAAAGA
GGACAATCCCAGAGGACTCTTGGAGGAGAGCAGCTTCGCAACCTTGTTCCCGAAATACCGCGAGGCTTAC
CTGAAGGAGTGCTGGCCGCTGGTGCAGAAGGCCTTGAATGAGCATCATGTTAAAGCAACGCTGGACTTGA
TCGAGGGTAGCATGACTGTTTGTACAACAAAGAAGACGTTTGACCCTTACATCATCATTAGGGCCCGAGA
CCTAATAAAGCTCTTGGCCAGGAGCGTTTCCTTTGAACAGGCAGTACGGATACTTCAGGATGATGTTGCG
TGTGACATCATTAAAATCGGCTCTCTAGTGAGAAATAAAGAGAGGTTTGTGAAGAGAAGACAGCGGCTTA
TTGGTCCCAAAGGATCCACCTTGAAGGCACTGGAGCTCCTGACAAACTGCTACGTCATGGTTCAGGGGAA
CACGGTCTCAGCCATCGGACCTTTCAGTGGCCTCAAAGAGGTTCGAAAAGTAGTCCTTGATACCATGAAG
AATATCCATCCAATTTATAACATTAAAACCTTGATGATTAAACGGGAGTTGGCAAAAGATTCCGAGTTAC
GATCACAAAGTTGGGAAAGATTTTTGCCACAGTTCAAGCACAAAAATGTGAATAAACGCAAGGAACCGAA
GAAGAAGAGTGTCAAGAAGGAGTACACGCCCTTCCCGCCCCCACAGCCAGAGAGTCAGATTGATAAAGAA
TTGGCCAGTGGTGAATACTTTTTGAAGGCGAGTCAGAAGAAGCGGCAGAAAATGGAAGCAATAAAGGCTA
AGCAAGCAGAAGCTCTTACAAAGAGGCAGGAAGAACGAAACAAAGCGTTTATTCCACCTAAGGAAAAGCC
AGCTGTGAAGCCAAAGGAAGCTTCTACCGAAACTAAGATTGATGTGGCTGCTATCAAGGAAAAGGTTAAG
AAAGCAAAGACGAAGAAACTGGGCGCTCTTACAGCGGAGGAAGTTAAGCTCAAGATGGAGGCTGACGAAA
AGAAGCAGAAGAGAAAAAAGTAG

Translation (380 aa):
MATSAEAPAKEAQKRDSQPQKQKRETQDEAELLTVPDGWKEPAFSKEDNPRGLLEESSFATLFPKYREAY
LKECWPLVQKALNEHHVKATLDLIEGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAVRILQDDVA
CDIIKIGSLVRNKERFVKRRQRLIGPKGSTLKALELLTNCYVMVQGNTVSAIGPFSGLKEVRKVVLDTMK
NIHPIYNIKTLMIKRELAKDSELRSQSWERFLPQFKHKNVNKRKEPKKKSVKKEYTPFPPPQPESQIDKE
LASGEYFLKASQKKRQKMEAIKAKQAEALTKRQEERNKAFIPPKEKPAVKPKEASTETKIDVAAIKEKVK
KAKTKKLGALTAEEVKLKMEADEKKQKRKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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