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Report for CCDS24143.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24143.1 Public Mus musculus 10 Epyc 23 108 98 CCDS HistoryNCBI Gene:13516Re-query CCDS DB by CCDS ID:24143.1Re-query CCDS DB by GeneID:13516See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24143.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000020094.7 ENSMUSP00000020094.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000020094.7Link to Ensembl Protein Viewer:ENSMUSP00000020094.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000020094Re-query CCDS DB by Protein ID:ENSMUSP00000020094
Original member Current member EBI ENSMUST00000105285.3 ENSMUSP00000100922.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000105285.3Link to Ensembl Protein Viewer:ENSMUSP00000100922.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000105285Re-query CCDS DB by Protein ID:ENSMUSP00000100922
Original member Current member NCBI NM_007884.2 NP_031910.1 Accepted alive Link to Nucleotide Sequence:NM_007884.2Link to Protein Sequence:NP_031910.1Re-query CCDS DB by Nucleotide ID:NM_007884Re-query CCDS DB by Protein ID:NP_031910Link to BLAST:NP_031910.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031910.1 322 P70186 322 100% 0 0

Chromosomal Locations for CCDS 24143.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 97649700 97649864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 97670498 97670672 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 97674677 97674835 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 97675646 97675848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 97676988 97677083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 97681100 97681270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (969 nt):
ATGGGAATGCTAGCAAGAGTTGCCCTGGGACTTATCATCATTGATGCTGTATTGGCTGCACCAACTACAG
AGCTCTTTAACTATGACTCAGAAGTGTATGATGCCATCTTGGAGGACACAGGGACCTTTTATAACTATGA
ACACATTCCTGACAACCATGTAGAGAACGAGAAAGTGTCTGAGAGGCTTTCTGGGAACAGAGAGCTCCTG
ACCCCAGGCCCACAGCTAGGGGACAACCAGGATGAAGACAAGGATGAAGAATCTACTCCCAGGCTGATCG
ATGGCTCTTCCCCACAGGAGCCAGAATTCCCGGGGCTTCTGGGTCCACACACCAACGAAGACTTTCCAAC
TTGTCTCCTGTGTACTTGTATAAGTACCACTGTATACTGTGATGACCATGAACTGGACGCTATTCCTCCA
CTGCCCAAGAAGACTACATATTTCTATTCACGTTTTAACAGAATTAAAAAGATCAACAAAAATGACTTTG
CAAGCTTAAATGATTTAAAAAGGATCGATCTGACATCAAATTTAATATCGGAGATTGATGAAGATGCATT
CCGAAAGCTGCCTCACCTCCAAGAGCTGGTTCTGCGTGACAATAAGATAAAGCAGCTTCCAGAATTGCCA
AACACTTTGACATTTATTGATATCAGCAACAATAGACTGGGAAGAAAAGGCATTAAACAAGAAGCTTTTA
AAGATATGTATGATCTCCACCATCTCTATATCACCGATAACAGCTTGGACCACATCCCTCTACCACTCCC
AGAAAGTCTGCGGGCTCTTCACCTCCAGAATAATGACATTCTGGAGATGCATGAAGATACTTTCTGCAAT
GTTAAAAATTTAACTTATGTTCGTAAGGCATTAGAGGATATTCGACTGGATGGAAACCCTATCAACCTCA
GCAGAACTCCTCAAGCCTACATGTGTCTACCTCGTTTGCCCATTGGGAGTTTTATCTAA

Translation (322 aa):
MGMLARVALGLIIIDAVLAAPTTELFNYDSEVYDAILEDTGTFYNYEHIPDNHVENEKVSERLSGNRELL
TPGPQLGDNQDEDKDEESTPRLIDGSSPQEPEFPGLLGPHTNEDFPTCLLCTCISTTVYCDDHELDAIPP
LPKKTTYFYSRFNRIKKINKNDFASLNDLKRIDLTSNLISEIDEDAFRKLPHLQELVLRDNKIKQLPELP
NTLTFIDISNNRLGRKGIKQEAFKDMYDLHHLYITDNSLDHIPLPLPESLRALHLQNNDILEMHEDTFCN
VKNLTYVRKALEDIRLDGNPINLSRTPQAYMCLPRLPIGSFI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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