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Report for CCDS24135.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24135.1 Public Mus musculus 10 Cradd 23 108 98 CCDS HistoryNCBI Gene:12905Re-query CCDS DB by CCDS ID:24135.1Re-query CCDS DB by GeneID:12905See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24135.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000053594.6 ENSMUSP00000050295.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000053594.6Link to Ensembl Protein Viewer:ENSMUSP00000050295.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000053594Re-query CCDS DB by Protein ID:ENSMUSP00000050295
Original member Current member EBI ENSMUST00000217809.1 ENSMUSP00000151735.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000217809.1Link to Ensembl Protein Viewer:ENSMUSP00000151735.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000217809Re-query CCDS DB by Protein ID:ENSMUSP00000151735
Original member Current member EBI ENSMUST00000220279.1 ENSMUSP00000152022.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000220279.1Link to Ensembl Protein Viewer:ENSMUSP00000152022.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000220279Re-query CCDS DB by Protein ID:ENSMUSP00000152022
Original member Current member NCBI NM_001330138.1 NP_001317067.1 Accepted alive Link to Nucleotide Sequence:NM_001330138.1Link to Protein Sequence:NP_001317067.1Re-query CCDS DB by Nucleotide ID:NM_001330138Re-query CCDS DB by Protein ID:NP_001317067Link to BLAST:NP_001317067.1
Original member Current member NCBI NM_001330141.1 NP_001317070.1 Accepted alive Link to Nucleotide Sequence:NM_001330141.1Link to Protein Sequence:NP_001317070.1Re-query CCDS DB by Nucleotide ID:NM_001330141Re-query CCDS DB by Protein ID:NP_001317070Link to BLAST:NP_001317070.1
Original member Current member NCBI NM_001330175.1 NP_001317104.1 Accepted alive Link to Nucleotide Sequence:NM_001330175.1Link to Protein Sequence:NP_001317104.1Re-query CCDS DB by Nucleotide ID:NM_001330175Re-query CCDS DB by Protein ID:NP_001317104Link to BLAST:NP_001317104.1
Original member Current member NCBI NM_009950.3 NP_034080.1 Accepted alive Link to Nucleotide Sequence:NM_009950.3Link to Protein Sequence:NP_034080.1Re-query CCDS DB by Nucleotide ID:NM_009950Re-query CCDS DB by Protein ID:NP_034080Link to BLAST:NP_034080.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001317067.1 199 O88843 199 100% 0 0
NP_001317070.1 199 O88843 199 100% 0 0
NP_001317104.1 199 O88843 199 100% 0 0
NP_034080.1 199 O88843 199 100% 0 0

Chromosomal Locations for CCDS 24135.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 95175677 95175978 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 95322586 95322883 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (600 nt):
ATGGAAGCCAGAGACAAGCAGGTACTCCGCTCCCTGCGTCTGGAGCTGGGTGCCGAGGTACTGGTGGAAG
GACTGGTTCTTCAGTACCTTTACCAGGAAGGAATTTTGACAGAAAACCACATTCAAGAAATCAAAGCTCA
AACCACAGGCCTCCGGAAGACAATGCTGTTGCTGGACATCCTGCCTTCCAGGGGCCCCAAAGCTTTTGAC
ACCTTCCTCGATTCCCTCCAGGAATTTCCCTGGGTAAGAGAGAAGCTGGAGAAGGCGAGAGAGGAAGTCA
CAGCCGAGCTGCCTACAGGTGACTGGATGGCCGGAATCCCCTCACACATCCTCAGCAGCTCGCCATCAGA
CCAGCAGATTAACCAGCTGGCTCAGAGGCTAGGCCCGGAGTGGGAGCCCGTGGTCCTGTCTCTGGGACTG
TCCCAGACCGACATCTACCGCTGCAAGGCCAACCATCCCCACAACGTGCATTCGCAGGTGGTGGAGGCCT
TTGTCCGCTGGCGCCAGCGTTTTGGGAAGCAGGCCACCTTCCTAAGCTTACACAAGGGCCTCCAGGCAGT
GGAGGCTGATCCCTCCCTGCTCCAGCACATGCTGGAGTGA

Translation (199 aa):
MEARDKQVLRSLRLELGAEVLVEGLVLQYLYQEGILTENHIQEIKAQTTGLRKTMLLLDILPSRGPKAFD
TFLDSLQEFPWVREKLEKAREEVTAELPTGDWMAGIPSHILSSSPSDQQINQLAQRLGPEWEPVVLSLGL
SQTDIYRCKANHPHNVHSQVVEAFVRWRQRFGKQATFLSLHKGLQAVEADPSLLQHMLE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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