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Report for CCDS24048.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24048.1 Public Mus musculus 10 Matk 23 108 98 CCDS HistoryNCBI Gene:17179Re-query CCDS DB by CCDS ID:24048.1Re-query CCDS DB by GeneID:17179See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24048.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000117488.7 ENSMUSP00000113221.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000117488.7Link to Ensembl Protein Viewer:ENSMUSP00000113221.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000117488Re-query CCDS DB by Protein ID:ENSMUSP00000113221
Original member NCBI NM_010768.2 NP_034898.1 Updated not alive Link to Nucleotide Sequence:NM_010768.2Link to Protein Sequence:NP_034898.1Re-query CCDS DB by Nucleotide ID:NM_010768Re-query CCDS DB by Protein ID:NP_034898
Current member NCBI NM_010768.3 NP_034898.1 Accepted alive Link to Nucleotide Sequence:NM_010768.3Link to Protein Sequence:NP_034898.1Re-query CCDS DB by Nucleotide ID:NM_010768Re-query CCDS DB by Protein ID:NP_034898Link to BLAST:NP_034898.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034898.1 505 P41242-1 505 99.604% 0 2

Chromosomal Locations for CCDS 24048.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 81258236 81258304 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81258480 81258539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81259177 81259287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81259383 81259498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81259587 81259806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81260089 81260182 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81260908 81260973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81261443 81261542 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81261631 81261715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81261795 81261868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81261961 81262156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81262448 81262534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81262623 81262862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1518 nt):
ATGGCAAGGCGAAGCTCCCGGGTCTCCTGGCTGGCCTTTGAAGGCTGGGAATCTAGGGACCTGCCTCGGG
TGAGCCCTAGATTGTTCGGAGCTTGGCACCCCGCGCCTGCTGCAGCTAGGATGCCAACGCGCTGGGCCCC
TGGGACTCAATGCATGACCAAGTGTGAGAACTCTCGCCCCAAGCCCGGTGAGCTAGCCTTTCGAAAGGGT
GACATGGTGACCATCTTGGAGGCCTGTGAGGACAAGAGCTGGTACCGAGCCAAGCACCATGGCAGTGGGC
AGGAAGGGCTGCTGGCGGCCGCTGCTCTGCGACAGCGGGAGGCCCTCTCCACAGACCCCAAGCTCAGCCT
CATGCCATGGTTTCATGGCAAGATCTCCGGCCAGGAAGCCATACAGCAGCTGCAGCCACCCGAGGACGGG
CTGTTCCTTGTGAGGGAATCAGCTCGTCACCCTGGAGACTATGTCTTGTGTGTCAGTTTCGGCCGTGACG
TCATCCACTACCGTGTTTTGCATCGAGATGGGCACCTCACCATCGATGAGGCCGTGTGTTTCTGTAACCT
GATGGACATGGTGGAGCACTACACCAAGGACAAGGGGGCCATCTGCACCAAGCTGGTGAAGCCAAGGAGG
AAACAGGGCGCAAAGTCTGCAGAGGAGGAGCTCGCCAAGGCTGGCTGGCTACTCGACCTGCAGCATCTGA
CTCTGGGAGCACAGATTGGAGAGGGGGAGTTTGGAGCCGTCCTACAGGGTGAGTACCTGGGACAGAAGGT
GGCTGTGAAGAATATCAAGTGTGATGTGACAGCCCAGGCCTTCCTGGATGAGACGGCTGTGATGACGAAG
CTGCAGCACAGGAACCTAGTGCGACTCCTGGGTGTGATCCTGCACCACGGCTTGTACATTGTCATGGAGC
ACGTGAGCAAGGGCAACCTGGTGAACTTCCTGCGCACGCGGGGCCGTGCTCTTGTGAGCACCTCTCAGCT
TCTGCAGTTTGCTCTTCATGTTGCTGAAGGCATGGAATACCTGGAGAGCAAGAAGCTGGTGCACCGGGAC
CTGGCTGCTCGGAACATCCTGGTCTCTGAGGACTTGGTGGCCAAGGTCAGTGACTTTGGCTTAGCCAAGG
CAGAGCGCAAGGGGCTGGACTCAAGCCGGCTGCCAGTCAAGTGGACGGCACCTGAGGCTCTCAAAAACGG
GCGGTTCTCCAGCAAGTCGGATGTCTGGAGTTTTGGGGTGCTGTTGTGGGAAGTCTTCTCTTATGGAAGA
GCCCCATACCCCAAGATGTCGCTAAAGGAGGTTTCAGAGGCTGTGGAGAAGGGTTACCGCATGGAGCCCC
CCGATGGCTGCCCAGGCTCTGTGCACACCCTCATGGGTAGCTGCTGGGAGGCAGAGCCTGCGCGCCGACC
ACCCTTCCGCAAAATAGTGGAGAAGCTGGGCCGTGAGCTCCGCAGTGTGGGTGTCTCGGCCCCCGCTGGG
GGACAGGAGGCTGAGGGCTCAGCTCCCACACGGAGCCAGGACCCCTGA

Translation (505 aa):
MARRSSRVSWLAFEGWESRDLPRVSPRLFGAWHPAPAAARMPTRWAPGTQCMTKCENSRPKPGELAFRKG
DMVTILEACEDKSWYRAKHHGSGQEGLLAAAALRQREALSTDPKLSLMPWFHGKISGQEAIQQLQPPEDG
LFLVRESARHPGDYVLCVSFGRDVIHYRVLHRDGHLTIDEAVCFCNLMDMVEHYTKDKGAICTKLVKPRR
KQGAKSAEEELAKAGWLLDLQHLTLGAQIGEGEFGAVLQGEYLGQKVAVKNIKCDVTAQAFLDETAVMTK
LQHRNLVRLLGVILHHGLYIVMEHVSKGNLVNFLRTRGRALVSTSQLLQFALHVAEGMEYLESKKLVHRD
LAARNILVSEDLVAKVSDFGLAKAERKGLDSSRLPVKWTAPEALKNGRFSSKSDVWSFGVLLWEVFSYGR
APYPKMSLKEVSEAVEKGYRMEPPDGCPGSVHTLMGSCWEAEPARRPPFRKIVEKLGRELRSVGVSAPAG
GQEAEGSAPTRSQDP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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