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Report for CCDS23976.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23976.1 Public Mus musculus 10 Vmn2r81 23 108 98 CCDS HistoryNCBI Gene:216144Re-query CCDS DB by CCDS ID:23976.1Re-query CCDS DB by GeneID:216144See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23976.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000020547.9 ENSMUSP00000020547.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000020547.9Link to Ensembl Protein Viewer:ENSMUSP00000020547.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000020547Re-query CCDS DB by Protein ID:ENSMUSP00000020547
Original member Current member NCBI NM_175936.2 NP_787950.1 Accepted alive Link to Nucleotide Sequence:NM_175936.2Link to Protein Sequence:NP_787950.1Re-query CCDS DB by Nucleotide ID:NM_175936Re-query CCDS DB by Protein ID:NP_787950Link to BLAST:NP_787950.1

Chromosomal Locations for CCDS 23976.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 79247794 79248008 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79267190 79267481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79268052 79268861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79270507 79270734 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79274600 79274723 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79292946 79293874 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2598 nt):
ATGCTGCTCTCTTGGCTTCTTATCGTTTGGTTTTTACAGATGCCAACTTTCACCTGGATCATTGCAACTC
ATATCTGCCCAACTGACACAAAATACCTAATATACTCTGATGGAACTGTTGTCATTGGTGCATTTTTTCC
AATTTTACATAATTCACTTGTACGTACAACAACAGATTGGAAATACTTTCCTATGGATTCAGATAATTAT
TTTGGGATGAGTGGACGAAATTACCAACTCGTTTTGGCCATGTTATTTGCCATCAATGAGATCAACTTGA
ACTCCCATATTTTACCAAACACCTCTCTTGGACTTGAGATTTATAATCTGCCAGCTATTGGAAGGAACAT
TTTTAGGACTGTATTCTCTTGGCTCACGGGTTTGAGTAGCGTGATCCCTAATTATACATGTAGAAAAGAA
AGCAATTCAGCTGCTACACTTACTGGAGTATCATGGAAAACATCTGAAACAATTTGGACCATATTGGATC
TTTACAAATTTCCTCAGCTTACTTTTGGGCCTTTTGATCCTGTTCAGATTGATAGAAACCAGTTTCAATC
TCTCTACCAGGTGGCCCCCAAAGACACAGCTCTATTGTCTGGTATTGCCTCTTTGATGCTTCATTTCAAC
TGGAACTGGGTGGGACTCCTCATCCCAGATGACCAGAGAGGTGCTCAGTTTCTATCAGACTTTAGAAAGG
AGCTAGACAAAACTAAAATCTGCATAGCTTTTGTGAAAACAGTATTATATCTGGGGGAAACCCTACTTCG
TTTGATATCACAAGATCATATCCACATTATAGAATCATCAACAGCAGATGTGATTGTAATTTATGGACCC
ACTTCTATTCTATTAACTTTAATAGAAAATACATATAGAACGTACAACAAGAAAAAAATTTGGGTTATGA
GTACAAAATGGTTTTGCCCAAATTTGGAACTATATAATATGTTAGAATTAACCCATGGGGCTCTGATTTT
TTCACCTCATTATAAGGAGATTGTTGGTTTCAAAAAGTTTATGCTAGAAGCCACCCCCATCAAGTACCCA
GAAGATATTTTTCTTCATTTATTGTGGTACTGGCATTTCAACTGCTCATTTTTGCATTCTGAATGTAAAA
TATTTGAAAACTGTCTGCAGAATGCCTCTTTGGAATTGTTGCCAGGAAATATTTTTACAATGACCATGAC
TGAAGAGAGTTACAATGTGTATAATGCTGTGTATGCAGTGGCCCACAGTCTGCATGAGGAGACACTCAGT
CAAATACAATTTCAACCACAGGCAAATATTGATAGGACTCTGTTATTCCCCTGGCAGCTTCACCCTTTTC
TGAAGAAGATTCAAGTGAAAAATTCTGTTGGGGACCACGTGGTTCTGGACTGGAAAAGGAAGGCAGATCC
AGAGTATGATATTACCAACATTTGGAATTTCCCAACAGGTCTTTCACTATTAGTGAAAGTGGGTACATTT
GTTCCCAGTGCTCCCAAAGGGGAACAATTGTCAATGTCTGAATATATGATTAGTTGGCCTATAGGATTTA
CAGAGATTCCTCACTCTGTATGCACTGAGAGCTGCAATCCTGGATTCAGGAAAGTTGTCCTGGAGAGCAA
GCCTACCTGTTGCTTTGATTGCACTCCTTGCCCAGATAATGAGATTTCCAATGAAACAGGTTTGGATCAT
TGTGTGCACTGTCCAGAAACTCATTATGCGAATGCAGAGAAGAGACACTGCCTGAAGAAAACAGTAACTT
TTCTGTACTATAATGATCCCCTGGGGAAGGGAATCACACTTCTTTCCATTGGATTCTCAACACTCACAGC
TCTTTTTATTTGGGTATTTGTAGACCACAGAGGCACTCCAATCATAAAGGCCAATAATAGATCTCTCAGT
TACATACTGCTCATCACTCTCATCCTCTGTTTCCTCTGTCCATTGCTCTTCATTGGCCTTCCAAATACAG
CAACGTGTATAATGCAACAGTACATGTTTGGACTTCTGTTCACTGTGGCCCTATCCACTGTGTTAGCCAA
AACCATCACTGTAGTTATGGCCTTCAAGATTACTGCTCCAGGAAGAAAGATAAGGTGGTTGCTGACATCA
CAGGTCCCTAAATTTGCCATTCCAATCTGCACACTGATACAAGTACTTCTGTCTGGTATATGGCTGGGAA
CATCTCCTCCATTTATTGACAAAGATTATCACTCTGAACATGGACACATCATCATTCTTTGCAACAAGGG
CTCATATATTTACTTCTACTGCACTCTGGCTTACCTGGGAGTCATGGCCTTTGGGAGTTACCTCTTGGCT
TTCTTATCCAGGAGACTGCCCGACAGATTTAATGAATCTAAGTCCCTGGCTTTCAGCATGCTTGTGTTCT
GCAGTGTATGGGTCATGTTCCTCCCTGTCTACCACAGCACCTCTGGGAAGGTCATGGTGGCTATGGAAAT
GTTCTCTATCTTGGCTTCCAGTGCAAGCATTCTTATCATAGTCTTTGCTCCTAAGTGCTACATTGTTTTG
TTTAGGCCAGAGTTGAACATACTTACTCACAACAGGGATAAAAGACACCACAGGAGCAAAACTTTTCTTA
AAACATAG

Translation (865 aa):
MLLSWLLIVWFLQMPTFTWIIATHICPTDTKYLIYSDGTVVIGAFFPILHNSLVRTTTDWKYFPMDSDNY
FGMSGRNYQLVLAMLFAINEINLNSHILPNTSLGLEIYNLPAIGRNIFRTVFSWLTGLSSVIPNYTCRKE
SNSAATLTGVSWKTSETIWTILDLYKFPQLTFGPFDPVQIDRNQFQSLYQVAPKDTALLSGIASLMLHFN
WNWVGLLIPDDQRGAQFLSDFRKELDKTKICIAFVKTVLYLGETLLRLISQDHIHIIESSTADVIVIYGP
TSILLTLIENTYRTYNKKKIWVMSTKWFCPNLELYNMLELTHGALIFSPHYKEIVGFKKFMLEATPIKYP
EDIFLHLLWYWHFNCSFLHSECKIFENCLQNASLELLPGNIFTMTMTEESYNVYNAVYAVAHSLHEETLS
QIQFQPQANIDRTLLFPWQLHPFLKKIQVKNSVGDHVVLDWKRKADPEYDITNIWNFPTGLSLLVKVGTF
VPSAPKGEQLSMSEYMISWPIGFTEIPHSVCTESCNPGFRKVVLESKPTCCFDCTPCPDNEISNETGLDH
CVHCPETHYANAEKRHCLKKTVTFLYYNDPLGKGITLLSIGFSTLTALFIWVFVDHRGTPIIKANNRSLS
YILLITLILCFLCPLLFIGLPNTATCIMQQYMFGLLFTVALSTVLAKTITVVMAFKITAPGRKIRWLLTS
QVPKFAIPICTLIQVLLSGIWLGTSPPFIDKDYHSEHGHIIILCNKGSYIYFYCTLAYLGVMAFGSYLLA
FLSRRLPDRFNESKSLAFSMLVFCSVWVMFLPVYHSTSGKVMVAMEMFSILASSASILIIVFAPKCYIVL
FRPELNILTHNRDKRHHRSKTFLKT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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