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Report for CCDS23890.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23890.1 Public Mus musculus 10 Kifbp 23 108 98 CCDS HistoryNCBI Gene:72320Re-query CCDS DB by CCDS ID:23890.1Re-query CCDS DB by GeneID:72320See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23890.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000065887.13 ENSMUSP00000065160.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000065887.13Link to Ensembl Protein Viewer:ENSMUSP00000065160.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000065887Re-query CCDS DB by Protein ID:ENSMUSP00000065160
Original member Current member NCBI NM_028197.2 NP_082473.2 Accepted alive Link to Nucleotide Sequence:NM_028197.2Link to Protein Sequence:NP_082473.2Re-query CCDS DB by Nucleotide ID:NM_028197Re-query CCDS DB by Protein ID:NP_082473Link to BLAST:NP_082473.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082473.2 617 Q6ZPU9-1 617 100% 0 0

Chromosomal Locations for CCDS 23890.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 62559008 62559883 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 62563236 62563351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 62566037 62566121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 62569459 62569642 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 62570399 62570478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 62575050 62575148 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 62577964 62578377 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1854 nt):
ATGGCGAACGCTCCGGGGCCAGAGATCCGCGAGAAGTTCCAGGCAGCGCTGGCCCTGTCGCGGGTGGAGC
TGCACAAGAACCCGGAGAAGGAGCCGTACAAGTCCAAGTACGGCGCGCGCGCGCTGTTGGAGGAGGTGCG
CGCGCTGCTGGGCCCGGCGCCCGAGGACGAGGACGAGCCGGCTGCTGACGATGGGCCGGGCGACCAGGCC
TTGGGCGCGGGTGAGCCCCGGGAGGCTGAGGGCCCCGGAGCGCAGCGGGCGCTGCGCCTCGCGGTGGTCG
AGTTCCACCTTGGTGTGAACCACATCGACACGGAGGAACTGTCTGCCGGCGAGGAGCATCTGGTCAGGTG
CCTGTCGTTGCTGCGCCCCTACCGCCTGTCGCTCGGCTGTGTGTCTCTCTACATCCAGGCGCAGAATAAC
CTGGGCATCCTGTGGTCTGAAAGGGAAGAGATCGAAACCGCCCGGACCTACCTGGAGTCATCGGAAGCCC
TGTACAGTCAGTACATGAAAGAGATTGGGAGCCCGCCTCTTGACCCGACTGAGCATTTTCTTCCTGAAGA
AGAGAAACTTACTGAACAAGAGAGATCAAAAAGATTTGAGAAGGTTTATACTCATAACCTGTATTACCTG
GCTCAAGTCTACCAGCACATGGAAATGTTCGAGAAGGCCGCTCATTATTGCCACAGCACACTGAAACGCC
AGCTTGAACACAATGCCTACCACCCCATGGAGTGGGCCATCAACGCCGCTACTCTATCACAGTTCTACAT
CAATAAGCTCTGTTTTATGGAAGCCAGACATTGTCTGTCAGCTGCTAATGTTATTTTTGGTCAAACTGGA
AAAATACCAGCTACAGAAGACACTCCTGAAGTTGAAGGAGACGTGCCAGAGCTTTACCATCAGAGGAAAG
GGGAAATAGCAAGATGCTGGATCAAGTACTGCCTGACTCTGATGCAAAACGCGCAGCTCTCCATGCAGGA
CAACATAGGAGAGCTTGACCTGGACAAGCAGTCGGAGCTCAGAGCTCTACGCAAGAAGGAGCTAGATGAG
GAGGAGAGCGTCAGGAAAAGGGCTGTGCAGTTTGGAACTGGGGAGCTGTGCGACGCCATCTCTGCAGTGG
AGGAGAAAGTGAGATACTTGAGGCCCTTAGATTTTGAAGAAGCCAGGGAGCTTTTCCTGCTGGGTCAGCA
CTATGTGTGTGAGGCAAAGGAGTTCTTCCAGATCGATGGGTATGTCACTGACCACATTGAAGTTGTCCAG
GACCACAGCGCTCTGTTCAAGGTGCTCTCGTTCTTTGAGGCTGACATGGAGAGACGGTGCAAGATGCACA
AGCGCAGGATAGCCATGCTAGAGCCCCTGACTGTGGACCTGAACCCACAGTACTACCTGTTGGTCAGCAG
GCAGATTCAGTTTGAAATCGCACACGCGTACTATGACATGATGGACTTGAAGGTCGCCATTGCTGACAAG
CTCAGGGACCCCGACTCACACATTGTCAAAAAAATAAATAGCCTGAATAAGTCGGCACTCAAGTACTACC
AGCTCTTCCTAGACTCCCTGAGAGACCCAAACAAAGTCTTTCCTGAGCACATCGGGGAAGACGTCCTCCG
CCCGGCCATGTTAGCTAAATTCCGGGTAGCTCGTCTGTATGGCAAAATCATCACTGCAGATCCCAAGAAA
GAGCTAGAGAATTTGGCAACATCTTTGGAACATTACAAATTTATTGTTGATTACTGTGAAACTCACCCCG
AGGCTGCCCAGGAAATAGAGGTTGAGTTAGAACTTAGTAAAGAGATGGTCAGTCTCCTCCCAACAAAAAT
GGAGAGGTTCAGAGCCAAGATGGCCCTGACCTAA

Translation (617 aa):
MANAPGPEIREKFQAALALSRVELHKNPEKEPYKSKYGARALLEEVRALLGPAPEDEDEPAADDGPGDQA
LGAGEPREAEGPGAQRALRLAVVEFHLGVNHIDTEELSAGEEHLVRCLSLLRPYRLSLGCVSLYIQAQNN
LGILWSEREEIETARTYLESSEALYSQYMKEIGSPPLDPTEHFLPEEEKLTEQERSKRFEKVYTHNLYYL
AQVYQHMEMFEKAAHYCHSTLKRQLEHNAYHPMEWAINAATLSQFYINKLCFMEARHCLSAANVIFGQTG
KIPATEDTPEVEGDVPELYHQRKGEIARCWIKYCLTLMQNAQLSMQDNIGELDLDKQSELRALRKKELDE
EESVRKRAVQFGTGELCDAISAVEEKVRYLRPLDFEEARELFLLGQHYVCEAKEFFQIDGYVTDHIEVVQ
DHSALFKVLSFFEADMERRCKMHKRRIAMLEPLTVDLNPQYYLLVSRQIQFEIAHAYYDMMDLKVAIADK
LRDPDSHIVKKINSLNKSALKYYQLFLDSLRDPNKVFPEHIGEDVLRPAMLAKFRVARLYGKIITADPKK
ELENLATSLEHYKFIVDYCETHPEAAQEIEVELELSKEMVSLLPTKMERFRAKMALT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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