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Report for CCDS23847.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23847.1 Public Mus musculus 10 Asf1a 23 108 98 CCDS HistoryNCBI Gene:66403Re-query CCDS DB by CCDS ID:23847.1Re-query CCDS DB by GeneID:66403See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23847.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000020004.7 ENSMUSP00000020004.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000020004.7Link to Ensembl Protein Viewer:ENSMUSP00000020004.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000020004Re-query CCDS DB by Protein ID:ENSMUSP00000020004
Original member Current member NCBI NM_025541.3 NP_079817.1 Accepted alive Link to Nucleotide Sequence:NM_025541.3Link to Protein Sequence:NP_079817.1Re-query CCDS DB by Nucleotide ID:NM_025541Re-query CCDS DB by Protein ID:NP_079817Link to BLAST:NP_079817.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079817.1 204 Q9CQE6 204 100% 0 0

Chromosomal Locations for CCDS 23847.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 53597190 53597298 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 53602348 53602463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 53606109 53606285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 53607665 53607877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (615 nt):
ATGGCAAAGGTTCAGGTGAACAATGTAGTGGTGCTGGATAACCCGTCGCCTTTCTACAACCCGTTCCAGT
TCGAGATCACCTTCGAGTGCATCGAGGACCTGTCTGAAGACTTGGAGTGGAAAATAATCTATGTGGGCTC
TGCAGAAAGTGAAGAATACGATCAAGTTTTAGACTCTGTTTTAGTGGGTCCCGTTCCTGCAGGAAGGCAT
ATGTTTGTGTTTCAGGCTGATGCACCGAATGCAGGACTCATCCCAGATGCAGATGCAGTGGGGGTAACAG
TTGTTCTGATTACTTGCACCTACCGAGGTCAAGAATTTATTAGAGTTGGCTACTATGTAAATAATGAATA
CACTGAAACAGAATTAAGGGAAAACCCACCAGTAAAACCAGACTTTTCTAAGCTTCAAAGGAATATTTTG
GCATCTAATCCCAGAGTCACAAGATTCCACATTAACTGGGAAGATAATACAGAAAAACTGGAAGATGCAG
AGAGCAGTAACCCAAATCTACAGTCCCTTCTTTCAACAGATGCATTACCGTCAGCGTCAAAGGGATGGTC
CACGTCAGAAAACTCACTCAATGTTATGTTAGAATCCCACATGGACTGCATGTGA

Translation (204 aa):
MAKVQVNNVVVLDNPSPFYNPFQFEITFECIEDLSEDLEWKIIYVGSAESEEYDQVLDSVLVGPVPAGRH
MFVFQADAPNAGLIPDADAVGVTVVLITCTYRGQEFIRVGYYVNNEYTETELRENPPVKPDFSKLQRNIL
ASNPRVTRFHINWEDNTEKLEDAESSNPNLQSLLSTDALPSASKGWSTSENSLNVMLESHMDCM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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