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Report for CCDS23767.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23767.1 Public Mus musculus 10 Hddc2 23 108 98 CCDS HistoryNCBI Gene:69692Re-query CCDS DB by CCDS ID:23767.1Re-query CCDS DB by GeneID:69692See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 23767.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000000304.13 ENSMUSP00000000304.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000000304.13Link to Ensembl Protein Viewer:ENSMUSP00000000304.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000000304Re-query CCDS DB by Protein ID:ENSMUSP00000000304
Original member Current member NCBI NM_027168.2 NP_081444.1 Accepted alive Link to Nucleotide Sequence:NM_027168.2Link to Protein Sequence:NP_081444.1Re-query CCDS DB by Nucleotide ID:NM_027168Re-query CCDS DB by Protein ID:NP_081444Link to BLAST:NP_081444.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081444.1 199 Q3SXD3 199 100% 0 0

Chromosomal Locations for CCDS 23767.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 31313415 31313483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 31314515 31314636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 31316293 31316395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 31320268 31320336 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 31326022 31326160 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 31327881 31327978 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (600 nt):
ATGGCTTTGGCCTCGTCCGGCTCTGGAGCCGGGCTGTTGCGTTTTCTGCGTCTAGTTGGGCAGCTCAAGA
GAGTTCCACGGACTGGCTGGGTATACAGAAATGTCGAAAAGCCAGAAAGCGTGTCAGATCACATGTACCG
GATGGCAGTTATGGCCATGGTGACCAGAGATGACCGTCTTAACAAGGATAGATGTATACGCCTAGCCCTG
GTTCACGATATGGCAGAATGCATCGTTGGGGACATAGCACCCGCAGATAACATCCCTAAAGAAGAGAAAC
ACAGGAGAGAAGAGGAGGCTATGAAACAGATAACCCAGCTGCTGCCAGAGGACCTCAGGAAGGAGCTATA
TGAACTCTGGGAAGAGTATGAGACTCAGTCTAGCGAAGAAGCCAAATTCGTGAAGCAGCTGGACCAGTGT
GAAATGATCCTTCAGGCCTCAGAATATGAAGACCTAGAGAATAAGCCTGGGAGACTTCAAGACTTCTATG
ATTCCACAGCAGGAAAATTCAGTCACCCTGAGATAGTCCAGCTTGTTTCTGAGCTGGAAACAGAAAGAAA
TGCCAGCATGGCCACAGCCTCAGCGGAGCCGGGCTCCTGA

Translation (199 aa):
MALASSGSGAGLLRFLRLVGQLKRVPRTGWVYRNVEKPESVSDHMYRMAVMAMVTRDDRLNKDRCIRLAL
VHDMAECIVGDIAPADNIPKEEKHRREEEAMKQITQLLPEDLRKELYELWEEYETQSSEEAKFVKQLDQC
EMILQASEYEDLENKPGRLQDFYDSTAGKFSHPEIVQLVSELETERNASMATASAEPGS


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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