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Report for CCDS23747.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23747.1 Public Mus musculus 10 Taar8c 23 108 98 CCDS HistoryNCBI Gene:494546Re-query CCDS DB by CCDS ID:23747.1Re-query CCDS DB by GeneID:494546See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23747.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000170267.2 ENSMUSP00000133193.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000170267.2Link to Ensembl Protein Viewer:ENSMUSP00000133193.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000170267Re-query CCDS DB by Protein ID:ENSMUSP00000133193
Original member Current member NCBI NM_001010840.2 NP_001010840.1 Accepted alive Link to Nucleotide Sequence:NM_001010840.2Link to Protein Sequence:NP_001010840.1Re-query CCDS DB by Nucleotide ID:NM_001010840Re-query CCDS DB by Protein ID:NP_001010840Link to BLAST:NP_001010840.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001010840.1 344 Q5QD05 344 100% 0 0

Chromosomal Locations for CCDS 23747.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 24100878 24101912 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1035 nt):
ATGACCAGCAACTTTTCCCAACCAGCCCTGCAGCTCTGCTATGAGAACACGAATGGATCCTGTATTAAAA
CTCCCTATTCTCCAGGGCCCCGGGTCATCCTGTACATGGTCTATGGCTTTGGGGCTGTGCTGGCAGTGTG
TGGGAACCTCCTGGTGGTGATTTCAGTTCTCCATTTCAAGCAGCTGCACTCTCCAGCCAATTTTCTCATC
GCCTCTCTGGCCAGTGCTGACTTCTTGGTGGGCATCTCTGTGATGCCCTTCAGCATGGTCAGGTCCATTG
AGAGCTGCTGGTACTTTGGAGATGCATTTTGTAGCCTTCACAGTTGCTGTGATGTGGCTTTTTGTTACTC
TTCTGCCCTCCACCTGTGCTTCATCTCAGTGGACAGGTACATAGCTGTCACGGACCCTCTGGTCTATCCC
ACCAAGTTCACAGTGTCTGTGTCTGGAATTTGCATCAGCATCTCCTGGATTCTGCCCCTGGTATACAGCA
GTGCAGTGTTCTACACAGGCATCAGTGCTAAGGGGATTGAAAGCTTAGTAAGTGCTCTGAATTGTGTAGG
GGGCTGCCAAGTTGTTGTCAATCAAGACTGGGTTTTGATAAGTTTTCTTTTATTCTTCATACCTACCGTT
GTTATGATCATTCTTTACAGCAAAATATTTTTGGTAGCCAAACAGCAAGCTGTAAAAATTGAAACTTCTG
TAAGTGGCAACAGAGGTGAATCATCCTCAGAGAGTCACAAAGCCAGAGTGGCCAAGAGAGAGAGGAAGGC
TGCAAAAACCTTGGGGGTCACTGTGGTGGCTTTTATGGTCTCGTGGCTCCCATACACAATTGATGCATTG
GTTGATGCTTTCATGGGCTTCATCACTCCTGCCTATGTCTATGAAATCTGTTGCTGGAGTGCCTATTATA
ACTCAGCCATGAACCCTTTGATTTATGCTTTCTTTTATCCTTGGTTTAGGAAAGCCATAAAGCTTATTTT
AAGTGGGAAAATTCTAAAGGGACATTCATCAACTACAAATTTATTTTCAGAGTAA

Translation (344 aa):
MTSNFSQPALQLCYENTNGSCIKTPYSPGPRVILYMVYGFGAVLAVCGNLLVVISVLHFKQLHSPANFLI
ASLASADFLVGISVMPFSMVRSIESCWYFGDAFCSLHSCCDVAFCYSSALHLCFISVDRYIAVTDPLVYP
TKFTVSVSGICISISWILPLVYSSAVFYTGISAKGIESLVSALNCVGGCQVVVNQDWVLISFLLFFIPTV
VMIILYSKIFLVAKQQAVKIETSVSGNRGESSSESHKARVAKRERKAAKTLGVTVVAFMVSWLPYTIDAL
VDAFMGFITPAYVYEICCWSAYYNSAMNPLIYAFFYPWFRKAIKLILSGKILKGHSSTTNLFSE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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